
TFMPvalue
 Referenced in 5 articles
[sw12326]
 TFMPvalue: Efficient and accurate Pvalue computation for Position Weight Matrices. TFMPvalue provides the accurate ... calculation of Pvalue with score threshold for Position Weight Matrices, or the score with ... given Pvalue. This package is an interface to code originally made available by Helene...

ftnonpar
 Referenced in 67 articles
[sw11128]
 Annals of Statistics. 29. p165 Davies, P. L. and Kovac, A. (2004) Densities, Spectral ... Smooth functions and local extreme values. Computational Statistics and Data Analysis (to appear) D”umbgen ... Extensions of smoothing via taut strings Davies, P. L. (1995) Data features. Statistica Neerlandica...

CONSEL
 Referenced in 4 articles
[sw35902]
 tree selection by giving the pvalues for the trees. The main thrust ... program is to calculate the pvalue of the Approximately Unbiased (AU) test using ... multiscale bootstrap technique. This pvalue is less biased than the other conventional ... pvalues such as the Bootstrap Probability (BP), the Kishino–Hasegawa (KH) test, the Shimodaira...

diptest
 Referenced in 8 articles
[sw23521]
 provide a test with simulation based pvalues, where the original public code has been...

seq.f95
 Referenced in 7 articles
[sw25839]
 test statistics, or their p values. Limiting the number of steps in an FDR procedure...

someKfwer
 Referenced in 4 articles
[sw06069]
 FWER control without $p $value adjustment, with application to detection of genetic determinants of multiple ... order until a suitable number of pvalues are found above the uncorrected α level ... pvalues can arise from any linear model in a parametric or nonparametric setting...

rp.flm.test
 Referenced in 7 articles
[sw28046]
 resampling and the combination of several pvalues, arising from different projections, by means...

GlobalAncova
 Referenced in 7 articles
[sw30019]
 approximated. Alternatively, an approximation yields asymptotic pvalues. The framework is generalized to groups...

MMCTest
 Referenced in 7 articles
[sw11179]
 multiple testing procedure applied to ideal $p$values. The method can be used with...

ESSC
 Referenced in 7 articles
[sw10959]
 ESSC procedure is based on $p$values for the strength of connection between a single...

ROAST
 Referenced in 7 articles
[sw17318]
 differential expression analysis in which a Pvalue is assigned to a set of genes...

AdaPT
 Referenced in 3 articles
[sw30027]
 observe both a (p)value (p_i) and some predictor (x_i) encoding contextual information ... framework for this problem, the adaptive (p)value thresholding procedure which we call AdaPT, which ... adaptively estimates a Bayes optimal (p)value rejection threshold and controls the false discovery rate ... rejection threshold and observes partially censored (p)values, estimates the false discovery proportion below...

FIMO
 Referenced in 6 articles
[sw17298]
 convert this score to a Pvalue and then applies false discovery rate analysis...

ToppGene Suite
 Referenced in 6 articles
[sw30169]
 score using statistical metaanalysis. A Pvalue of each annotation of a test gene...

Probalign
 Referenced in 6 articles
[sw24613]
 OXBENCH benchmarks. Probalign ranks statistically highest (Pvalue < 0.005) on all three benchmarks. Deeper scrutiny...

CVODES
 Referenced in 35 articles
[sw04946]
 systems (initial value problem) given in explicit form y’ = f(t,y,p) with sensitivity...

nparcomp
 Referenced in 5 articles
[sw23408]
 layout. Moreover, it computes simultaneous pvalues. The simultaneous confidence intervals can be computed using...

MiPred
 Referenced in 5 articles
[sw29580]
 secondary structure and Pvalue of randomization test is used. Besides, a novel machinelearning...

CAFE
 Referenced in 3 articles
[sw12375]
 gain and loss (quantified by a pvalue) and identify which branches cause ... pvalue to be small for significant families. Availability: Software is available from http://www.bio.indiana.edu...

TFisher
 Referenced in 2 articles
[sw22609]
 package TFisher: Optimal Thresholding Fisher’s PValue Combination Method. We provide the cumulative distribution ... collection of thresholding Fisher’s pvalue combination methods, including Fisher’s pvalue combination ... particular, softthresholding Fisher’s pvalue combination method which is proven to be optimal ... some context of signal detection. The pvalue calculator for the omnibus version of these...