• TFMPvalue

  • Referenced in 5 articles [sw12326]
  • TFMPvalue: Efficient and accurate P-value computation for Position Weight Matrices. TFMPvalue provides the accurate ... calculation of P-value with score threshold for Position Weight Matrices, or the score with ... given P-value. This package is an interface to code originally made available by Helene...
  • ftnonpar

  • Referenced in 67 articles [sw11128]
  • Annals of Statistics. 29. p1-65 Davies, P. L. and Kovac, A. (2004) Densities, Spectral ... Smooth functions and local extreme values. Computational Statistics and Data Analysis (to appear) D”umbgen ... Extensions of smoothing via taut strings Davies, P. L. (1995) Data features. Statistica Neerlandica...
  • CONSEL

  • Referenced in 4 articles [sw35902]
  • tree selection by giving the p-values for the trees. The main thrust ... program is to calculate the p-value of the Approximately Unbiased (AU) test using ... multi-scale bootstrap technique. This p-value is less biased than the other conventional ... p-values such as the Bootstrap Probability (BP), the Kishino–Hasegawa (KH) test, the Shimodaira...
  • diptest

  • Referenced in 8 articles [sw23521]
  • provide a test with simulation based p-values, where the original public code has been...
  • seq.f95

  • Referenced in 7 articles [sw25839]
  • test statistics, or their p values. Limiting the number of steps in an FDR procedure...
  • someKfwer

  • Referenced in 4 articles [sw06069]
  • FWER control without $p $-value adjustment, with application to detection of genetic determinants of multiple ... order until a suitable number of p-values are found above the uncorrected α level ... p-values can arise from any linear model in a parametric or nonparametric setting...
  • rp.flm.test

  • Referenced in 7 articles [sw28046]
  • resampling and the combination of several p-values, arising from different projections, by means...
  • GlobalAncova

  • Referenced in 7 articles [sw30019]
  • approximated. Alternatively, an approximation yields asymptotic p-values. The framework is generalized to groups...
  • MMCTest

  • Referenced in 7 articles [sw11179]
  • multiple testing procedure applied to ideal $p$-values. The method can be used with...
  • ESSC

  • Referenced in 7 articles [sw10959]
  • ESSC procedure is based on $p$-values for the strength of connection between a single...
  • ROAST

  • Referenced in 7 articles [sw17318]
  • differential expression analysis in which a P-value is assigned to a set of genes...
  • AdaPT

  • Referenced in 3 articles [sw30027]
  • observe both a (p)-value (p_i) and some predictor (x_i) encoding contextual information ... framework for this problem, the adaptive (p)-value thresholding procedure which we call AdaPT, which ... adaptively estimates a Bayes optimal (p)-value rejection threshold and controls the false discovery rate ... rejection threshold and observes partially censored (p)-values, estimates the false discovery proportion below...
  • FIMO

  • Referenced in 6 articles [sw17298]
  • convert this score to a P-value and then applies false discovery rate analysis...
  • ToppGene Suite

  • Referenced in 6 articles [sw30169]
  • score using statistical meta-analysis. A P-value of each annotation of a test gene...
  • Probalign

  • Referenced in 6 articles [sw24613]
  • OXBENCH benchmarks. Probalign ranks statistically highest (P-value < 0.005) on all three benchmarks. Deeper scrutiny...
  • CVODES

  • Referenced in 35 articles [sw04946]
  • systems (initial value problem) given in explicit form y’ = f(t,y,p) with sensitivity...
  • nparcomp

  • Referenced in 5 articles [sw23408]
  • layout. Moreover, it computes simultaneous p-values. The simultaneous confidence intervals can be computed using...
  • MiPred

  • Referenced in 5 articles [sw29580]
  • secondary structure and P-value of randomization test is used. Besides, a novel machine-learning...
  • CAFE

  • Referenced in 3 articles [sw12375]
  • gain and loss (quantified by a p-value) and identify which branches cause ... p-value to be small for significant families. Availability: Software is available from http://www.bio.indiana.edu...
  • TFisher

  • Referenced in 2 articles [sw22609]
  • package TFisher: Optimal Thresholding Fisher’s P-Value Combination Method. We provide the cumulative distribution ... collection of thresholding Fisher’s p-value combination methods, including Fisher’s p-value combination ... particular, soft-thresholding Fisher’s p-value combination method which is proven to be optimal ... some context of signal detection. The p-value calculator for the omnibus version of these...