• ASTALAVISTA

  • Referenced in 3 articles [sw17177]
  • ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets ... computational tools to address ‘complex’ AS events. ASTALAVISTA (alternative splicing transcriptional landscape visualization tool) employs ... picture of the resulting AS landscape. Thus, ASTALAVISTA can characterize AS for whole transcriptome data...
  • R

  • Referenced in 8180 articles [sw00771]
  • R is a language and environment for statistical...
  • STAR

  • Referenced in 12 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 291 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • Rfam

  • Referenced in 32 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • RNAshapes

  • Referenced in 7 articles [sw07960]
  • RNAshapes: an integrated RNA analysis package based on...
  • onechannelgui

  • Referenced in 3 articles [sw07962]
  • oneChannelGUI: A graphical interface designed to facilitate analysis...
  • BaySeq

  • Referenced in 17 articles [sw10343]
  • baySeq: Empirical Bayesian analysis of patterns of differential...
  • EMBOSS

  • Referenced in 34 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • ClustalW

  • Referenced in 133 articles [sw12016]
  • CLUSTAL W: improving the sensitivity of progressive multiple...
  • Mfold

  • Referenced in 41 articles [sw12672]
  • Mfold web server for nucleic acid folding and...
  • KEGG

  • Referenced in 250 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
  • VARNA

  • Referenced in 5 articles [sw16406]
  • VARNA: Interactive drawing and editing of the RNA...
  • CompaRNA

  • Referenced in 2 articles [sw16474]
  • CompaRNA: a server for continuous benchmarking of automated...
  • Galaxy

  • Referenced in 12 articles [sw16927]
  • Galaxy: A platform for interactive large-scale genome...
  • FastQC

  • Referenced in 5 articles [sw16946]
  • FastQC: A quality control tool for high throughput...
  • Infernal

  • Referenced in 11 articles [sw17000]
  • Infernal 1.1: 100-fold faster RNA homology searches...