• APBS

  • Referenced in 85 articles [sw05766]
  • numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models...
  • Boltzmann

  • Referenced in 40 articles [sw07008]
  • methods for the space non-homogeneous Boltzmann equation. In this paper we present accurate methods ... numerical solution of the Boltzmann equation of rarefied gas. The methods are based...
  • MIBPB

  • Referenced in 46 articles [sw08106]
  • package for electrostatic analysis. The Poisson–Boltzmann equation (PBE) is an established model...
  • TABI

  • Referenced in 19 articles [sw18194]
  • biomolecules described by the linear Poisson-Boltzmann equation. The method employs a well-conditioned boundary ... surface is triangulated and the integral equations are discretized by centroid collocation. The linear system ... compare results for the Poisson-Boltzmann and Poisson equations. We show that the treecode approximation...
  • Bolsig

  • Referenced in 15 articles [sw12508]
  • numerical solution of the Boltzmann equation for electrons in weakly ionized gases in uniform electric ... model; using the above assumptions, the Boltzmann equation reduces to a convection-diffusion continuity-equation...
  • TMSmesh

  • Referenced in 16 articles [sw14719]
  • surface points by solving a nonlinear equation directly, polygonizes by connecting surface points through ... boundary element solutions of the Poisson−Boltzmann equation, which directly gives rise to a route...
  • PBEQ-Solver

  • Referenced in 13 articles [sw17203]
  • read biomolecular structures, solve the Poisson-Boltzmann (PB) equations and interactively visualize the electrostatic potential...
  • AFMPB

  • Referenced in 7 articles [sw08875]
  • described an adaptive fast multipole Poisson-Boltzmann solver for computing the electrostatics in biomolecules. This ... integral equation of the linearized Poisson-Boltzmann equation. Numerical experiments show the efficiency...
  • SDPBS

  • Referenced in 6 articles [sw17208]
  • ionic solvated biomolecules. The Poisson-Boltzmann equation (PBE) is one important implicit solvent continuum model...
  • HOMISBOLTZ

  • Referenced in 3 articles [sw06049]
  • Nonlinear Boltzmann equation for the homogeneous isotropic case: minimal deterministic Matlab program The problem consists ... integrating the homogeneous Boltzmann equation for a generic collisional kernel in case of isotropic symmetry...
  • DENOVO

  • Referenced in 7 articles [sw18081]
  • obtain accurate solutions to the Boltzmann transport equation. Denovo uses the Koch-Baker-Alcouffe parallel...
  • SMPBS

  • Referenced in 4 articles [sw23654]
  • library of size modified Poisson-Boltzmann equation (SMPBE) solvers that incorporates finite element, finite difference ... SDPBS web server, uses the classic Poisson-Boltzmann model...
  • dugksFoam

  • Referenced in 3 articles [sw22283]
  • open source OpenFOAM solver for the Boltzmann model equation. A deterministic Boltzmann model equation solver...
  • FeatLBE

  • Referenced in 2 articles [sw31316]
  • simulation techniques for the stationary lattice Boltzmann equation on general meshes. In this paper ... numerical simulation of the Lattice Boltzmann equation (LBE). In Hübner and Turek (Computing...
  • almaBTE

  • Referenced in 3 articles [sw20281]
  • solver of the space-time dependent Boltzmann transport equation for phonons in structured materials. almaBTE ... solves the space- and time-dependent Boltzmann transport equation for phonons, using only ab-initio...
  • ShengBTE

  • Referenced in 3 articles [sw17641]
  • ShengBTE: a solver of the Boltzmann transport equation for phonons. ShengBTE is a software package ... full iterative solution to the Boltzmann transport equation. Its main inputs are sets of second...
  • PyGBe

  • Referenced in 3 articles [sw17642]
  • Lenhoff (1990) for solving the Poisson-Boltzmann equation of the implicit-solvent model in integral...
  • LS-VISM

  • Referenced in 3 articles [sw16158]
  • interface method for the dielectric Poisson–Boltzmann equation. Such numerical methods and algorithms constitute...
  • Apbsmem

  • Referenced in 4 articles [sw22298]
  • numerically solve the Poisson-Boltzmann (PB) equation, and there are several easy-to-use software ... packages available that solve the PB equation for soluble proteins. Here we present a freely ... Boltzmann Solver (APBS) is used as a back-end for solving the PB equation...
  • AQUASOL

  • Referenced in 3 articles [sw17113]
  • efficient solver for the dipolar Poisson–Boltzmann–Langevin equation. The Poisson–Boltzmann (PB) formalism ... space. In contrast, the dipolar Poisson–Boltzmann–Langevin (DPBL) formalism represents the solvent ... models lead to significant differences in the equations they generate. The PB equation...