• GSHMC

  • Referenced in 16 articles [sw02631]
  • process similar to stochastic Langevin and Brownian dynamics simulations. It is, however, ultimate...
  • UHBD

  • Referenced in 7 articles [sw08088]
  • simulations with the University-of-Houston Brownian dynamics program. This paper is a follow ... Commun. 62 (1991) 187–197) on the Brownian Dynamics/Electrostatics program UHBD developed at the University ... ionizable groups in proteins, performing Brownian dynamics simulations with a flexible substrate and target...
  • ReaDDy

  • Referenced in 4 articles [sw17865]
  • highly detailed molecular dynamics or Brownian dynamics simulations and large-scale but little-detailed reaction ... dynamical models that are different from Brownian dynamics...
  • move

  • Referenced in 5 articles [sw20809]
  • data, among others functions to calculate dynamic Brownian Bridge Movement Models. Move helps addressing movement...
  • SDA

  • Referenced in 3 articles [sw08089]
  • protein-protein association explained by Brownian dynamics computer simulations. Proc. Natl. Acad. Sci. U.S.A ... association is electrostatically facilitated. We report Brownian dynamics simulations of the diffusional association of barnase...
  • Macrodox

  • Referenced in 2 articles [sw08087]
  • MacroDox Brownian Dynamics Software. MacroDox is software for setting up and running Brownian dynamics simulations ... plausible docked complexes using a Brownian dynamics algorithm and make predictions of the most energetically ... Exploiting the sophistication of our existing Brownian Dynamics methodology, the program would allow an automated ... attainment of docked complexes by Brownian dynamics...
  • rheoTool

  • Referenced in 2 articles [sw30706]
  • mechanics solvers, RheoTool also has a Brownian dynamics solver to simulate polymer molecules individually ... electrically-driven flows. The Brownian dynamics solver was presented in Pimenta...
  • Browndye

  • Referenced in 3 articles [sw08086]
  • Browndye: A Software Package for Brownian Dynamics. A new software package, Browndye, is presented...
  • Pyboo

  • Referenced in 1 article [sw30915]
  • particle-based simulations (typically molecular dynamics, brownian dynamics, monte-carlo, etc.) or in particle-tracking...
  • RedMD

  • Referenced in 1 article [sw32713]
  • Berendsen and Langevin thermostats, and with Brownian dynamics. We provide force field and topology generators...
  • PB-AM

  • Referenced in 0 articles [sw16459]
  • appropriate for visualization using VMD, a Brownian dynamics scheme that uses periodic boundary conditions...
  • Chaste

  • Referenced in 42 articles [sw00122]
  • Chaste: incorporating a novel multi-scale spatial and...
  • Diffpack

  • Referenced in 111 articles [sw00203]
  • As modern programming methodologies migrate from computer science...
  • GEANT4

  • Referenced in 39 articles [sw00328]
  • Differential elastic hadron-nucleus cross-sections are discussed...
  • gmp

  • Referenced in 260 articles [sw00363]
  • GMP is a free library for arbitrary precision...
  • Gmsh

  • Referenced in 545 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • LAPACK

  • Referenced in 1599 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 4956 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 5756 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 11649 articles [sw00558]
  • MATLAB® is a high-level language and interactive...