Mathematical software

Cell-PLoc
Referenced in 90 articles [sw09126]
various organisms. Information on subcellular localization of proteins is important to molecular cell biology, proteomics ... specialized for eukaryotic, human, plant, Gram-positive bacterial, Gram-negative bacterial and viral proteins, respectively...

pLoc-mGneg
Referenced in 23 articles [sw25190]
mGneg: Predict subcellular localization of Gram-negative bacterial proteins by deep gene ontology learning ... study is focused on the Gram-negative bacterial proteins. Although considerable efforts have been made ... evidences have indicated that many Gram-negative bacterial proteins exist in two or more location ... predicting the subcellular localization of Gram-negative bacterial proteins with both single and multiple locations...

Gneg-mPLoc
Referenced in 16 articles [sw25879]
predicting subcellular localization of Gram-negative bacterial proteins. By incorporating the information of gene ontology ... used to identify Gram-negative bacterial proteins among the following eight locations: (1) cytoplasm...

SecretP
Referenced in 14 articles [sw22470]
developed to predict secreted proteins of Gram-negative and Gram-positive bacteria ... identifying bacterial secreted proteins with those of six published methods, proteins in Escherichia coli ... construct the test sets of Gram-negative and Gram-positive bacteria, and the prediction results ... also yields satisfactory results for Gram-negative bacterial proteins. The prediction server SecretP...

pLoc_bal-mGneg
Referenced in 7 articles [sw28523]
mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset ... identifying the subcellular localization of Gram-negative bacterial proteins. Its performance is overwhelmingly better than ... label systems in which some proteins, called “multiplex proteins”, may simultaneously occur ... identifying the subcellular localization of Gram-negative bacterial proteins. To maximize the convenience for most...

PSLpred
Referenced in 5 articles [sw35525]
predicting subcellular localization of gram-negative bacterial proteins with an overall accuracy of 91.2%. PSLpred...

Psortb
Referenced in 18 articles [sw11344]
Psortb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome ... Motivation: PSORTb v.1.1 is the most precise bacterial localization prediction tool available. However, the program ... method is only applicable to Gram-negative bacteria. The goals of the present work ... existing precision level, expand it to include Gram-positive bacteria and then carry...

PROFtmb
Referenced in 4 articles [sw11343]
bacterial transmembrane beta barrel proteins. PROFtmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative ... validated testing set is 86% while whole-protein discrimination accuracy was 70 at 60% coverage ... whole-proteome predictions from 78 Gram-negative bacterial genomes and is available freely and without...

ngLOC
Referenced in 1 article [sw22472]
Bayesian classifier that predicts subcellular localization of proteins both in prokaryotes and eukaryotes. The overall ... distinct locations on gram-positive and gram-negative bacterial datasets, respectively. CONCLUSIONS: ngLOC ... variety of species or classes for predicting protein subcellular localization. The standalone software is freely...

iRSpot-TNCPseAAC
Referenced in 31 articles [sw22412]
iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition...

Cell-PLoc