• Memtype-2L

  • Referenced in 39 articles [sw16472]
  • types by incorporating evolution information through pse-PSSM. Given an uncharacterized protein sequence ... representing the protein samples with the Pse-PSSM (Pseudo Position-Specific Score Matrix) vectors...
  • MemHyb

  • Referenced in 15 articles [sw25194]
  • membrane protein types by hybridizing SAAC and PSSM. About 50% of available drugs are targeted...
  • POSSUM

  • Referenced in 8 articles [sw24532]
  • generating numerical sequence feature descriptors based on PSSM profiles. Evolutionary information in the form ... Position-Specific Scoring Matrix (PSSM) is a widely used and highly informative representation of protein ... sequences. Accordingly, PSSM-based feature descriptors have been successfully applied to improve the performance ... server that can generate 21 types of PSSM-based feature descriptors, thereby addressing a crucial...
  • MotifCut

  • Referenced in 5 articles [sw35400]
  • practice both motifs that fit well the PSSM model, and those that exhibit strong dependencies...
  • GNBSL

  • Referenced in 2 articles [sw26874]
  • PSFM) and a position-specific scoring matrix (PSSM) for each protein sequence by searching ... four modules from the PSFM and the PSSM. The features include whole-sequence amino acid...
  • fsaLib

  • Referenced in 3 articles [sw14518]
  • probabilistic automata from regular expressions or PSSM (Position Specific Scoring Matrix) and then is able...
  • CyclinPred

  • Referenced in 1 article [sw22405]
  • BLAST generated Position Specific Scoring Matrix (PSSM) profiles. Results obtained from Leave-One-Out cross ... classifier trained with features of PSSM profile was more accurate than the classifiers based ... setup based on SVM model trained with PSSM profiles. CyclinPred prediction results prove that...
  • RVMAB

  • Referenced in 1 article [sw24037]
  • sequences on a Position Specific Scoring Matrix (PSSM). Secondly, Principal Component Analysis (PCA) method...
  • StackDPPred

  • Referenced in 0 articles [sw34125]
  • profile, called the position-specific scoring matrix (PSSM) profile, alone and the accuracies of such ... called StackDPPred, which utilizes features extracted from PSSM and residue specific contact-energy to help...
  • SVMlight

  • Referenced in 260 articles [sw04076]
  • Description (homepage): SVMlight is an implementation of Vapnik...
  • LIBSVM

  • Referenced in 1089 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • BOMP

  • Referenced in 4 articles [sw11337]
  • BOMP: a program to predict integral β-barrel...
  • PROFtmb

  • Referenced in 4 articles [sw11343]
  • PROFtmb: a web server for predicting bacterial transmembrane...
  • ML-KNN

  • Referenced in 58 articles [sw12923]
  • Ml-knn: A lazy learning approach to multi...
  • PseAAC

  • Referenced in 30 articles [sw16469]
  • PseAAC: A flexible web server for generating various...