• Holes

  • Referenced in 8 articles [sw15021]
  • Holes: python package for persistent homology calculations. The Python module contains various functions to produce...
  • Pse-analysis

  • Referenced in 6 articles [sw23361]
  • Analysis: a Python package for DNA/RNA and protein/peptide sequence analysis based on pseudo components ... genome/proteome analysis, we have developed a Python package called Pse-Analysis. The powerful package...
  • HTSeq

  • Referenced in 8 articles [sw16898]
  • www-huber.embl.de/HTSeq or from the Python Package Index https://pypi.python.org/pypi/HTSeq....
  • Seglearn

  • Referenced in 5 articles [sw23641]
  • Seglearn: A Python Package for Learning Sequences and Time Series. Seglearn is an open-source ... python package for machine learning time series or sequences using a sliding window segmentation approach...
  • FluidSim

  • Referenced in 4 articles [sw25606]
  • FluidSim: modular, object-oriented Python package for high-performance CFD simulations. The Python package fluidsim ... Python ecosystem and the Application Programming Interfaces (API) provided by fluiddyn and fluidfft packages (Mohanan ... design aspects of fluidsim, viz. use of Python as the main language; focus...
  • dynesty

  • Referenced in 6 articles [sw28387]
  • present dynesty, a public, open-source, Python package to estimate Bayesian posteriors and evidences (marginal...
  • tslearn

  • Referenced in 6 articles [sw28447]
  • tslearn is a Python package that provides machine learning tools for the analysis of time ... package builds on scikit-learn, numpy and scipy libraries. tslearn is a general-purpose Python...
  • iFeature

  • Referenced in 6 articles [sw27776]
  • iFeature: A python package and web server for features extraction and selection from protein ... peptide sequences. iFeature is a comprehensive Python-based toolkit for generating various numerical feature representation...
  • DirectDM

  • Referenced in 6 articles [sw31393]
  • available as a Mathematica and a python package. The Mathematica package is available from: github.com...
  • ABC-SysBio

  • Referenced in 6 articles [sw24739]
  • questions. RESULTS: Here we present a Python package, ABC-SysBio, that implements parameter inference...
  • InterpretML

  • Referenced in 6 articles [sw30904]
  • Interpretability- InterpretML is an open-source Python package which exposes machine learning interpretability algorithms...
  • yt

  • Referenced in 6 articles [sw28814]
  • open-source, permissively-licensed python package for analyzing and visualizing volumetric data. yt supports structured...
  • tsfresh

  • Referenced in 4 articles [sw28448]
  • Scalable Hypothesis tests (tsfresh – A Python package). Time series feature engineering is a time-consuming ... meaningful features from time series. The Python package tsfresh (Time Series FeatuRe Extraction on basis...
  • Kwant

  • Referenced in 5 articles [sw19547]
  • Kwant is a free (open source) Python package for numerical calculations on tight-binding models ... packages. Instead, one writes short programs in the powerful yet easy-to-learn Python language...
  • h5py

  • Referenced in 7 articles [sw14817]
  • h5py – HDF5 for python. The h5py package is a Pythonic interface to the HDF5 binary...
  • PyTransport

  • Referenced in 5 articles [sw26567]
  • PyTransport: A Python package for the calculation of inflationary correlation functions. PyTransport constitutes a straightforward ... code written in C++ together with Python scripts which automatically edit, compile...
  • ForwardDiff

  • Referenced in 11 articles [sw16106]
  • Julia. We present ForwardDiff, a Julia package for forward-mode automatic differentiation (AD) featuring performance ... other popular high-level languages such as Python and MATLAB, ForwardDiff takes advantage of just ... reverse-mode implementation from the Python-based autograd package. We also illustrate how ForwardDiff...
  • F2PY

  • Referenced in 31 articles [sw04610]
  • order of multi-dimensional Fortran and Numerical Python (i.e. C) arrays. In addition, F2PY ... NumPy package that provides fast multi-dimensional array language facility to Python...
  • geomstats

  • Referenced in 3 articles [sw24373]
  • geomstats: a Python Package for Riemannian Geometry in Machine Learning. We introduce geomstats, a python...
  • DeBaCl

  • Referenced in 3 articles [sw23572]
  • DeBaCl: A Python Package for Interactive DEnsity-BAsed CLustering. The level set tree approach ... complex and high-dimensional data. Several R packages exist for level set tree estimation ... trees, we have written the Python package DeBaCl for DEnsity-BAsed CLustering. In this article...