• ClustalW

• Referenced in 133 articles [sw12016]
• CLUSTAL W: improving the sensitivity of progressive multiple...

• Mfold

• Referenced in 41 articles [sw12672]
• Mfold web server for nucleic acid folding and...

• FR3D

• Referenced in 5 articles [sw13838]
• FR3D stands for “Find RNA 3D” and is...

• KEGG

• Referenced in 252 articles [sw13866]
• KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...

• Clustal X

• Referenced in 28 articles [sw16249]
• Clustal W and Clustal X version 2.0. Summary...

• VARNA

• Referenced in 5 articles [sw16406]
• VARNA: Interactive drawing and editing of the RNA...

• CompaRNA

• Referenced in 2 articles [sw16474]
• CompaRNA: a server for continuous benchmarking of automated...

• OBSTRUCT

• Referenced in 3 articles [sw16886]
• OBSTRUCT: a program to obtain largest cliques from...

• DNdisorder

• Referenced in 2 articles [sw16907]
• DNdisorder: predicting protein disorder using boosting and deep...

• Galaxy

• Referenced in 12 articles [sw16927]
• Galaxy: A platform for interactive large-scale genome...

• FastQC

• Referenced in 5 articles [sw16946]
• FastQC: A quality control tool for high throughput...

• Infernal

• Referenced in 11 articles [sw17000]
• Infernal 1.1: 100-fold faster RNA homology searches...

• CONFOLD

• Referenced in 1 article [sw17008]
• CONFOLD: Residue-residue contact-guided ab initio protein...

• Oases

• Referenced in 3 articles [sw17027]
• Oases: robust de novo RNA-seq assembly across...

• SOAPdenovo

• Referenced in 8 articles [sw17028]
• SOAP: Short Oligonucleotide Analysis Package. SOAPdenovo is a...

• RNAmute

• Referenced in 2 articles [sw17059]
• The RNAmute web server for the mutational analysis...

• RNAexinv

• Referenced in 2 articles [sw17114]
• RNAexinv: an extended inverse RNA folding from shape...

• RNAfbinv

• Referenced in 1 article [sw17115]
• RNAfbinv: an interactive Java application for fragment-based...

• RNAalifold

• Referenced in 3 articles [sw17116]
• RNAalifold: improved consensus structure prediction for RNA alignments...

• CONTRAfold

• Referenced in 8 articles [sw17117]
• For several decades, free energy minimization methods have...