• RNAplex

  • Referenced in 4 articles [sw17143]
  • RNAplex: a fast tool for RNA-RNA interaction search. Motivation: Regulatory RNAs often ... unfold their action via RNA-RNA interaction. Transcriptional gene silencing by means...
  • starBase

  • Referenced in 10 articles [sw23121]
  • miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP ... surprisingly little is known about the regulatory interaction networks among the multiple classes of RNAs ... systematically identify the RNA-RNA and protein-RNA interaction networks from...
  • RactIP

  • Referenced in 2 articles [sw17120]
  • fast and accurate prediction of RNA-RNA interaction using integer programming. Motivation: Considerable...
  • IntaRNA

  • Referenced in 1 article [sw29324]
  • fast and accurate prediction of interactions between two RNA molecules. It has been designed ... predict other types of RNA-RNA interactions. Precomputed results for Enterobacteria: ChiX, CyaR...
  • R

  • Referenced in 8180 articles [sw00771]
  • R is a language and environment for statistical...
  • STAR

  • Referenced in 12 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation...
  • Bioconductor

  • Referenced in 291 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • Rfam

  • Referenced in 32 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • RNAshapes

  • Referenced in 7 articles [sw07960]
  • RNAshapes: an integrated RNA analysis package based...
  • onechannelgui

  • Referenced in 3 articles [sw07962]
  • oneChannelGUI: A graphical interface designed to facilitate analysis...
  • BaySeq

  • Referenced in 17 articles [sw10343]
  • baySeq: Empirical Bayesian analysis of patterns of differential...
  • EMBOSS

  • Referenced in 34 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • ClustalW

  • Referenced in 133 articles [sw12016]
  • CLUSTAL W: improving the sensitivity of progressive multiple...
  • Mfold

  • Referenced in 41 articles [sw12672]
  • Mfold web server for nucleic acid folding and...
  • KEGG

  • Referenced in 250 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
  • VARNA

  • Referenced in 5 articles [sw16406]
  • VARNA: Interactive drawing and editing of the RNA...
  • CompaRNA

  • Referenced in 2 articles [sw16474]
  • CompaRNA: a server for continuous benchmarking of automated...