• SNVMix

  • Referenced in 4 articles [sw29569]
  • evaluated these approaches on 16 ovarian cancer RNASeq datasets with matched genotyping arrays...
  • PROPER

  • Referenced in 2 articles [sw17314]
  • package PROPER: PROspective Power Evaluation for RNAseq. This package provide simulation based methods for evaluating...
  • compcodeR

  • Referenced in 1 article [sw23834]
  • expression methods for RNA-seq data. Bioconductor: RNAseq data simulation, differential expression analysis and performance ... different methods for differential expression analysis of RNAseq data. It also contains functions for simulating...
  • RNASeqR

  • Referenced in 1 article [sw28858]
  • After running functions in order, a basic RNASeq analysis would be done easily...
  • R

  • Referenced in 8180 articles [sw00771]
  • R is a language and environment for statistical...
  • Snow

  • Referenced in 20 articles [sw01447]
  • Snow: A parallel computing framework for the R...
  • STAR

  • Referenced in 12 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 291 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • faraway

  • Referenced in 22 articles [sw04357]
  • Extending the linear model with R. Generalized linear...
  • Rfam

  • Referenced in 32 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • RNAshapes

  • Referenced in 7 articles [sw07960]
  • RNAshapes: an integrated RNA analysis package based on...
  • onechannelgui

  • Referenced in 3 articles [sw07962]
  • oneChannelGUI: A graphical interface designed to facilitate analysis...
  • DEGseq

  • Referenced in 11 articles [sw07998]
  • DEGseq: an R package for identifying differentially expressed...
  • R-INLA

  • Referenced in 62 articles [sw08014]
  • Extending integrated nested Laplace approximation to a class...
  • pegas

  • Referenced in 4 articles [sw08307]
  • pegas: Population and Evolutionary Genetics Analysis System. pegas...
  • affy

  • Referenced in 34 articles [sw08345]
  • An R Package for Analyses of Affymetrix Oligonucleotide...
  • Rcpp

  • Referenced in 188 articles [sw08385]
  • Rcpp: Seamless R and C++ Integration. The Rcpp...
  • BaySeq

  • Referenced in 17 articles [sw10343]
  • baySeq: Empirical Bayesian analysis of patterns of differential...
  • DEseq

  • Referenced in 48 articles [sw10344]
  • DESeq: Differential gene expression analysis based on the...