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  • EDAseq
  • Referenced in 5 articles [sw10345]
  • EDASeq: Exploratory Data Analysis and Normalization for RNA...

  • RUVseq
  • Referenced in 5 articles [sw10348]
  • RUVSeq: Remove Unwanted Variation from RNA-Seq Data...

  • EMBOSS
  • Referenced in 34 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...

  • ClustalW
  • Referenced in 133 articles [sw12016]
  • CLUSTAL W: improving the sensitivity of progressive multiple...

  • Mfold
  • Referenced in 41 articles [sw12672]
  • Mfold web server for nucleic acid folding and...

  • KEGG
  • Referenced in 252 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...

  • rehh
  • Referenced in 2 articles [sw16135]
  • R package rehh. Functions for the detection of...

  • VARNA
  • Referenced in 5 articles [sw16406]
  • VARNA: Interactive drawing and editing of the RNA...

  • CompaRNA
  • Referenced in 2 articles [sw16474]
  • CompaRNA: a server for continuous benchmarking of automated...

  • ShortRead
  • Referenced in 4 articles [sw16605]
  • ShortRead: a bioconductor package for input, quality assessment...

  • Galaxy
  • Referenced in 12 articles [sw16927]
  • Galaxy: A platform for interactive large-scale genome...

  • FastQC
  • Referenced in 5 articles [sw16946]
  • FastQC: A quality control tool for high throughput...

  • Infernal
  • Referenced in 11 articles [sw17000]
  • Infernal 1.1: 100-fold faster RNA homology searches...

  • Oases
  • Referenced in 3 articles [sw17027]
  • Oases: robust de novo RNA-seq assembly across...

  • SOAPdenovo
  • Referenced in 8 articles [sw17028]
  • SOAP: Short Oligonucleotide Analysis Package. SOAPdenovo is a...

  • RNAmute
  • Referenced in 2 articles [sw17059]
  • The RNAmute web server for the mutational analysis...

  • RNAexinv
  • Referenced in 2 articles [sw17114]
  • RNAexinv: an extended inverse RNA folding from shape...