• NESTA

  • Referenced in 120 articles [sw06576]
  • which there are fewer alternatives, such as total-variation minimization and convex programs seeking...
  • PARAMESH

  • Referenced in 99 articles [sw00677]
  • adaptive mesh refinement. Alternatively, in its simplest use, and with minimal effort, it can operate...
  • TVAL3

  • Referenced in 18 articles [sw08575]
  • TVAL3: TV minimization by Augmented Lagrangian and ALternating direction ALgorithms: Based on the classic augmented ... combines an alternating direction technique with a nonmonotone line search to minimize the augmented Lagrangian...
  • NBI

  • Referenced in 184 articles [sw05075]
  • multicriteria optimization problems This paper proposes an alternate method for finding several Pareto optimal points ... property which the popular method of minimizing weighted combinations of objective functions lacks. Further, this...
  • SVR-AMA

  • Referenced in 1 article [sw29521]
  • asynchronous alternating minimization algorithm with variance reduction for model predictive control applications. This paper focuses ... methods (Prox-SVRG) and on the alternating minimization algorithm (AMA). The resultant algorithm, a stochastic...
  • AceView

  • Referenced in 3 articles [sw23000]
  • genome then clustered into a minimal number of alternative transcript variants and grouped into genes...
  • flare

  • Referenced in 17 articles [sw12406]
  • dimensional sparse linear model. We adopt the alternating direction method of multipliers and convert ... into a sequential L1 penalized least square minimization problem, which can be efficiently solved...
  • CONTRAfold

  • Referenced in 8 articles [sw17117]
  • several decades, free energy minimization methods have been the dominant strategy for single sequence ... free grammars (SCFGs) have emerged as an alternative probabilistic methodology for modeling RNA structure. Unlike ... probabilistic methods have not replaced free energy minimization methods as the tool of choice ... that statistical learning procedures provide an effective alternative to empirical measurement of thermodynamic parameters...
  • PAL-Tiling

  • Referenced in 1 article [sw28419]
  • PRIMPING routine -- Tiling through proximal alternating linearized minimization. .. We introduce PAL-Tiling, a general framework...
  • HotKnots

  • Referenced in 4 articles [sw17267]
  • algorithm explores many alternative secondary structures, using a free energy minimization algorithm for pseudoknot free...
  • ASPIC

  • Referenced in 3 articles [sw17147]
  • alternative splicing as an optimization problem, where the optimal multiple transcript alignment minimizes the number ... this algorithm in the software tool ASPIC (Alternative Splicing PredICtion). It is distinguished from other ... intron boundaries. ASPIC also provides the minimal set of non-mergeable transcript isoforms compatible with...
  • Complex Optimization Toolbox

  • Referenced in 23 articles [sw14744]
  • dogleg trust region, nonlinear least squares: minimization of vector-, matrix- or tensor-valued residual functions ... started with the Complex Optimization Toolbox. Alternatively, see the toolbox’s Contents.m for an overview...
  • D-ADMM

  • Referenced in 16 articles [sw28440]
  • propose a distributed algorithm, named Distributed Alternating Direction Method of Multipliers (D-ADMM), for solving ... each node. The goal is to minimize the sum of all the cost functions, constraining...
  • StatCrunch

  • Referenced in 4 articles [sw10158]
  • accessible alternative to commercial statistical software via the WWW with the only minimal requirement...
  • NJFORMULA

  • Referenced in 10 articles [sw10306]
  • finding an optimal summation formula with a minimal number of summation variables, thereby improving ... often better than) the results of the alternative approach NJGRAF, introduced...
  • NSPCG

  • Referenced in 30 articles [sw00636]
  • diagonals to completely unstructured sparse matrices. Alternatively, the package allows the user to call ... Chebyshev (SI, for semi-iterative), generalized minimal residual (GMRES), biconjugate gradient squared (BCGS) and many...
  • PalmPrints

  • Referenced in 2 articles [sw01755]
  • explore an alternative means of hand image classification, one that requires minimal human intervention...
  • Kima

  • Referenced in 3 articles [sw08979]
  • symbol occurrence in the program, a minimal subset also tells possible sources of program errors ... alternatives that include an intended program. Search space is kept small because the minimal subset...
  • cqrReg

  • Referenced in 2 articles [sw21332]
  • cqrReg using alternating direction method of multipliers (ADMM), majorize-minimization (MM), and coordinate descent...
  • NetSketch

  • Referenced in 2 articles [sw20006]
  • exploration of alternative safe designs as well as the identification of minimal requirements for outsourced...