• AAindex

  • Referenced in 46 articles [sw26861]
  • AAindex: amino acid index database. AAindex is a database of numerical indices representing various physicochemical ... biochemical properties of amino acids and pairs of amino acids. It consists of two sections ... AAindex1 for the amino acid index of 20 numerical values and AAindex2 for the amino...
  • iSNO-PseAAC

  • Referenced in 39 articles [sw22446]
  • proteins by incorporating position specific amino acid propensity into pseudo amino acid composition. Posttranslational modifications ... proteins by incorporating the position-specific amino acid propensity (PSAAP) into the general form ... pseudo amino acid composition (PseAAC). The predictor was implemented using the conditional random field...
  • propy

  • Referenced in 27 articles [sw22402]
  • features of proteins and peptides from amino acid sequence. It computes five feature groups composed ... features, including amino acid composition, dipeptide composition, tripeptide composition, normalized Moreau-Broto autocorrelation, Moran autocorrelation ... properties and two types of pseudo amino acid composition (PseAAC) descriptors. These features could...
  • PseAAC

  • Referenced in 30 articles [sw16469]
  • generating various kinds of protein pseudo amino acid composition. The pseudo amino acid (PseAA) composition...
  • iRSpot-TNCPseAAC

  • Referenced in 31 articles [sw22412]
  • Spots with Trinucleotide Composition and Pseudo Amino Acid Components. Meiosis and recombination ... trinucleotide composition (TNC) and the pseudo amino acid components (PseAAC) of the protein translated from...
  • Euk-mPLoc

  • Referenced in 42 articles [sw26860]
  • those with less than 50 amino acids) is 90,909, meaning...
  • MAFFT

  • Referenced in 41 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or nucleotide sequences. MAFFT is a multiple sequence...
  • PseAAC-Builder

  • Referenced in 25 articles [sw22404]
  • generating various special Chou’s pseudo-amino acid compositions. The pseudo-amino acid composition ... various modes of Chou’s pseudo-amino acid composition in a much more efficient...
  • iPPI-Esml

  • Referenced in 26 articles [sw22413]
  • general form of PseAAC (pseudo amino acid composition): (1) the physicochemical properties derived from ... constituent amino acids of a protein; and (2) the wavelet transforms derived from the numerical...
  • ESLpred

  • Referenced in 20 articles [sw22403]
  • prediction methods are based on either amino acid composition or N-terminal characteristics ... from their different features such as amino acid composition, dipeptide composition and physico-chemical properties ... than the SVM modules based on amino acid composition or physico-chemical properties. In addition ... dipeptide compositions, 33 properties, 20 amino acid compositions of the protein and 5 from...
  • GPCR-2L

  • Referenced in 22 articles [sw22409]
  • hybridizing two different modes of pseudo amino acid compositions. G protein-coupled receptors (GPCRs ... hybridizing two different modes of pseudo-amino acid composition (PseAAC): the functional domain PseAAC ... query protein sequence of 500 amino acids. The longer the sequence is, the more time...
  • GPCR-CA

  • Referenced in 35 articles [sw25949]
  • samples of proteins through their pseudo amino acid composition (Chou, K.C. Proteins...
  • Hum-PLoc

  • Referenced in 24 articles [sw26863]
  • ontology (GO) database and amphiphilic pseudo amino acid composition (PseAA). Based on such a representation ... buried into a pile of complicated amino acid sequences although with a different manner...
  • pSuc-Lys

  • Referenced in 31 articles [sw16643]
  • coupled information into the general pseudo amino acid composition, (2) balancing out skewed training dataset...
  • pLoc-mEuk

  • Referenced in 31 articles [sw24440]
  • information into the general PseAAC (Pseudo Amino Acid Composition). Rigorous cross-validations on a high...
  • iNitro-Tyr

  • Referenced in 22 articles [sw22450]
  • sites in proteins with general pseudo amino acid composition. Nitrotyrosine is one of the post ... dipeptide propensity into the general pseudo amino acid composition for discriminating the nitrotyrosine sites from...
  • Seq-Gen

  • Referenced in 30 articles [sw08310]
  • simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models...
  • iHSP-PseRAAAC

  • Referenced in 16 articles [sw25193]
  • shock protein families using pseudo reduced amino acid alphabet composition. Heat shock proteins (HSPs ... been developed by incorporating the reduced amino acid alphabet information into the general form ... pseudo amino acid composition. One of the remarkable advantages of introducing the reduced amino acid ... escaped our notice that the reduced amino acid alphabet approach can also be used...
  • iMethyl-PseAAC

  • Referenced in 21 articles [sw22443]
  • Protein Methylation Sites via a Pseudo Amino Acid Composition Approach. Before becoming the native proteins ... into the general form of pseudo amino acid composition. It was observed by the rigorous...
  • 2D-MH

  • Referenced in 21 articles [sw19727]
  • physicochemical properties of their constituent amino acids. Introduction of graphic representation for biological sequences ... mass of each of the constituent amino acids and its hydrophobicity. The graphic curve thus...