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  • ClustalW
  • Referenced in 133 articles [sw12016]
  • CLUSTAL W: improving the sensitivity of progressive multiple...

  • Mfold
  • Referenced in 41 articles [sw12672]
  • Mfold web server for nucleic acid folding and...

  • KEGG
  • Referenced in 252 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...

  • Python
  • Referenced in 1352 articles [sw14460]
  • Python is a widely used high-level, general...

  • VARNA
  • Referenced in 5 articles [sw16406]
  • VARNA: Interactive drawing and editing of the RNA...

  • CompaRNA
  • Referenced in 2 articles [sw16474]
  • CompaRNA: a server for continuous benchmarking of automated...

  • Galaxy
  • Referenced in 12 articles [sw16927]
  • Galaxy: A platform for interactive large-scale genome...

  • FastQC
  • Referenced in 5 articles [sw16946]
  • FastQC: A quality control tool for high throughput...

  • Infernal
  • Referenced in 11 articles [sw17000]
  • Infernal 1.1: 100-fold faster RNA homology searches...

  • Oases
  • Referenced in 3 articles [sw17027]
  • Oases: robust de novo RNA-seq assembly across...

  • SOAPdenovo
  • Referenced in 8 articles [sw17028]
  • SOAP: Short Oligonucleotide Analysis Package. SOAPdenovo is a...

  • RNAmute
  • Referenced in 2 articles [sw17059]
  • The RNAmute web server for the mutational analysis...

  • RNAexinv
  • Referenced in 2 articles [sw17114]
  • RNAexinv: an extended inverse RNA folding from shape...

  • RNAfbinv
  • Referenced in 1 article [sw17115]
  • RNAfbinv: an interactive Java application for fragment-based...

  • RNAalifold
  • Referenced in 3 articles [sw17116]
  • RNAalifold: improved consensus structure prediction for RNA alignments...

  • CONTRAfold
  • Referenced in 8 articles [sw17117]
  • For several decades, free energy minimization methods have...

  • Rnaz
  • Referenced in 3 articles [sw17118]
  • Rnaz 2.0: improved noncoding RNA detection. RNAz is...