• FEASPUMP

  • Referenced in 122 articles [sw04802]
  • clever way to round a sequence of fractional solutions of the LP relaxation, until ... Constraint Programming. Extensive computational results on binary and general integer MIPs from the literature show...
  • IGTools

  • Referenced in 2 articles [sw34225]
  • Public available genomic sequences are often distributed in FASTA format. Before to run an IGTools ... FASTA file into a specific binary sequence format named 3bit. After the conversion, an indexing...
  • rec-BTP

  • Referenced in 2 articles [sw34277]
  • intra-tumor heterogeneity from high-throughput sequencing data. Binary Tree Partition (BTP) is a novel...
  • AS 48

  • Referenced in 1 article [sw03903]
  • Uncertainty function for a binary sequence...
  • AS 49

  • Referenced in 1 article [sw03904]
  • Autocorrelation function for a binary sequence...
  • riskRegression

  • Referenced in 2 articles [sw19175]
  • binomial regression based on a time sequence of binary event status variables. A formula interface...
  • TANDEM

  • Referenced in 8 articles [sw31816]
  • type of sequence-to-data matching. AVAILABILITY: The source code and binaries for this software...
  • FXT

  • Referenced in 9 articles [sw05348]
  • Bruijn sequences). Number theoretic transforms and modular arithmetics are implemented. Operations on binary polynomials...
  • FaceRecLib

  • Referenced in 1 article [sw07686]
  • face recognition algorithms: local Gabor binary pattern histogram sequences (LGBPHS), Gabor graph comparisons with...
  • BamTools

  • Referenced in 2 articles [sw35121]
  • produced by current sequencing technologies is typically stored in compressed, binary formats that...
  • GeneRAGE

  • Referenced in 5 articles [sw35909]
  • algorithm for the automatic clustering of protein sequence datasets has been developed. This algorithm represents ... similarity relationships within the dataset in a binary matrix. Removal of false positives is achieved...
  • seqCBS

  • Referenced in 6 articles [sw12152]
  • Copy Number Profiling using Next-Generation Sequencing. It has new model and test statistics based ... models. It uses an adaptation of Circular Binary Segmentation. Also included are methods for point...
  • CASOP

  • Referenced in 2 articles [sw02094]
  • binary associative operator A fast algorithm is presented that, given a sequence of data items ... composition of a binary associative operator. The algorithm is order M where...
  • VMAttack

  • Referenced in 1 article [sw31766]
  • layer of protected binaries. Using static analysis, complex bytecode sequences of the VM are mapped ... like the interpreter loop and compress instruction sequences by filtering out semantically redundant instructions ... machines like VMProtect. We evaluated VMAttack using binaries obfuscated with VMProtect and achieved an average...
  • SABRE

  • Referenced in 2 articles [sw24536]
  • form of binary, ordinal, count and linear recurrent events. The response sequences...
  • breakfast

  • Referenced in 3 articles [sw22395]
  • change-point detection in data sequences, or sequence segmentation, using computationally efficient multiscale methods. This ... implements the ”Tail-Greedy Unbalanced Haar”, ”Wild Binary Segmentation” and ”Adaptive Wild Binary Segmentation” change...
  • CoMIK

  • Referenced in 1 article [sw35270]
  • variable-length sequences, as evidenced by the results of three binary classification experiments, aided...
  • SuperTriplets

  • Referenced in 3 articles [sw29604]
  • various phylogenies built from different genomic sequences into a single one. This task is generally ... step approach whereby a binary representation of the initial trees is first inferred and then...
  • MethylCoder

  • Referenced in 2 articles [sw35177]
  • MethylCoder: software pipeline for bisulfite-treated sequences. Motivation: MethylCoder is a software program that generates ... reads. MethylCoder outputs data in text and binary formats in addition to the final alignment ... format, so that common high-throughput sequencing tools can be used on the resulting output...
  • GRASS

  • Referenced in 4 articles [sw12609]
  • novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS ... expectation–maximization procedure and an unconstrained binary quadratic programming approximation of the original problem ... data, in the form of related genome sequences, are used. Availability: GRASS source code...