• phytools

  • Referenced in 13 articles [sw10003]
  • evolution; fitting a model of correlated binary trait evolution; locating the position of a fossil...
  • DIMTEST

  • Referenced in 12 articles [sw33561]
  • that an essentially unidimensional latent trait model fits observed binary item response data from...
  • SNPassoc

  • Referenced in 3 articles [sw07122]
  • linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype...
  • GLOGS

  • Referenced in 1 article [sw23133]
  • powerful method for GWAS of binary traits with risk covariates in related populations. Summary: Mixed ... genome-wide association studies (GWAS) of binary traits in related individuals can account...
  • GWAF

  • Referenced in 1 article [sw19000]
  • nucleotide polymorphisms (SNPs) and a binary or continuous trait with user specified genetic model ... simulated continuous trait and a binary trait dichotomized from the simulated continuous trait with real...
  • gatars

  • Referenced in 1 article [sw30171]
  • trait characteristics; and b) for binary traits, analyzing affected relatives brings more power than analyzing...
  • wtest

  • Referenced in 1 article [sw17087]
  • Interaction Effect in Genotype Data with Binary Traits. This R package evaluates main and pair...
  • P2BAT

  • Referenced in 2 articles [sw25497]
  • PBAT-analysis tools for binary and complex traits into R and makes them accessible through...
  • RVFam

  • Referenced in 0 articles [sw18961]
  • families but lacking components to handle binary traits properly and survival traits. In this report ... data) designed to analyze continuous, binary and survival traits against rare and common sequencing variants...
  • phylolm

  • Referenced in 0 articles [sw17222]
  • provides functions for simulating continuous or binary traits along the tree. Other tools include functions...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • identification of loci associated with complex traits. Currently, imputed single nucleotide polymorphisms (SNP) data ... genome-wide imputed SNP data and quantitative, binary, and time-till-event outcomes under linear ... proportional hazards models, respectively. For quantitative traits, the package also implements a fast two-step...
  • BMRV

  • Referenced in 0 articles [sw17527]
  • variants and a trait that can be continuous, ordinal or binary. Bayesian latent variable collapsing ... Furthermore, it deals with continuous, binary and ordinal traits...
  • diversitree

  • Referenced in 6 articles [sw26122]
  • character evolution. Contains implementations of ’BiSSE’ (Binary State ’Speciation’ and Extinction) and its unresolved tree ... include Markov models of discrete and continuous trait evolution and constant rate ’speciation’ and extinction...
  • IRTm2noHA

  • Referenced in 2 articles [sw25347]
  • Depending on the structure of these latent traits, different models can be considered. This paper ... simulate binary response data with a latent structure involving general and specific traits, specify prior...
  • CollapsABEL

  • Referenced in 0 articles [sw18173]
  • allows flexible analysis of binary and continuous traits with covariates...
  • aSPU

  • Referenced in 0 articles [sw17060]
  • generalized estimation equations, ’MTaSPUs’ test for multiple traits - single ’SNP’ association with Genome Wide Association ... response variable is binary or quantitative. Summary; (1) Single trait-’SNP’ set association with individual...
  • IRTmu2no

  • Referenced in 4 articles [sw25350]
  • necessarily measuring the same underlying trait, and hence the more general multi-unidimensional model should ... allow a user the choice to simulate binary response data with multiple dimensions...
  • MultiCIRT

  • Referenced in 1 article [sw13206]
  • Item Response Theory (IRT) models for binary and ordinal polytomous items is illustrated ... allowing for multidimensionality and discreteness of latent traits. They also allow for different parameterizations ... response variables given the latent traits, depending on both the type of link function ... package, two datasets are analyzed: one concerning binary items and referred to the measurement...
  • FastMap

  • Referenced in 3 articles [sw20452]
  • homozygous populations. MOTIVATION: Gene expression Quantitative Trait Locus (eQTL) mapping measures the association between transcript ... eQTL mapping in homozygous inbred populations with binary allele calls. FastMap exploits the discrete nature...
  • AssocTests

  • Referenced in 0 articles [sw16007]
  • genotype at a biallelic marker and a trait using the Wald test or the Fisher ... between a single nucleotide polymorphism and a binary phenotype using the maximum value ... variant and a non-normal distributed quantitative trait based on the nonparametric risk), and nonparametric...