• SPIRAL

  • Referenced in 46 articles [sw00903]
  • variety of platforms including SSE, multicore, Cell, GPU, distributed memory parallel processors, and FPGA...
  • LED

  • Referenced in 46 articles [sw18983]
  • serialized architecture performing operations on a single cell per clock cycle. Then, we propose...
  • Plant-mPLoc

  • Referenced in 27 articles [sw22435]
  • fundamental goals in proteomics and cell biology is to identify the functions of proteins ... among the following 12 location sites: (1) cell membrane, (2) cell wall, (3) chloroplast...
  • pLoc-mEuk

  • Referenced in 31 articles [sw24440]
  • hence many organelles in an eukaryotic cell cannot be covered, and (2) they can only ... depth understanding the biological process in a cell and for selecting drug target as well...
  • BacSim

  • Referenced in 21 articles [sw17261]
  • relating the properties of microscopic entities – cells – to the properties of macroscopic, complex systems such ... growth of a single Escherichia coli cell into a colony was studied. The object-oriented ... bacterial properties including substrate uptake, metabolism, maintenance, cell division and death at the individual cell ... lattice is used. For growth-rate-dependent cell size variation, a conceptual model of cell...
  • SOLA

  • Referenced in 43 articles [sw24124]
  • technique, based on the Marker-and-Cell method, is simplified to facilitate...
  • RAMSES

  • Referenced in 26 articles [sw18064]
  • structure allowing recursive grid refinements on a cell-by-cell basis. The N-body solver ... particles and $4.1 imes 10^7$ cells in the AMR grid, reaching a formal resolution...
  • K Prover

  • Referenced in 41 articles [sw32257]
  • organize the system/program state in units called cells, which are labeled and can be nested...
  • MixedVol

  • Referenced in 29 articles [sw00581]
  • mixed volume as well as the mixed cells. The mixed cells are crucial for solving...
  • OSIRIS

  • Referenced in 29 articles [sw02458]
  • three-dimensional, fully relativistic particle in cell code for modeling plasma based accelerators. We describe ... relativistic, massively parallel, object oriented particle-in-cell code for modeling plasma based accelerators. Developed...
  • CTH

  • Referenced in 22 articles [sw08719]
  • Lagrangian step in which the cells distort to follow the material motion. The second step ... remesh step where the distorted cells are mapped back to the Eulerian mesh ... motion of fragments smaller than a computational cell. The elastic-plastic model is elastic-perfectly ... moving fragments smaller than a computational cell with statistically the correct velocity. This model...
  • pLoc-mAnimal

  • Referenced in 28 articles [sw24438]
  • with both single and multiple sites. Motivation: Cells are deemed the basic unit of life ... However, many important functions of cells as well as their growth and reproduction are performed...
  • StarPU

  • Referenced in 39 articles [sw14216]
  • example of a parallel computer mixing IBM Cell Broadband Engines and AMD opteron processors. Other...
  • iPPI-Esml

  • Referenced in 26 articles [sw22413]
  • properties and wavelet transforms into PseAAC. A cell contains thousands of proteins. Many important functions ... cell are carried out through the proteins therein. Proteins rarely function alone. Most of their...
  • HOT

  • Referenced in 25 articles [sw10803]
  • treecodes, and extend them to include general cell-cell interactions. Performance of the program...
  • VCFEM-HOMO

  • Referenced in 25 articles [sw35054]
  • plastic materials with asymptotic homogenization and Voronoi cell finite element model. A multiple scale finite ... combining asymptotic homogenization theory with the Voronoi cell finite element model (VCFEM). VCFEM for microstructural...
  • Amelia

  • Referenced in 35 articles [sw04533]
  • they have about the values of missing cells in their data. Amelia II also includes...
  • PaToH

  • Referenced in 35 articles [sw09873]
  • multilevel hypergraph partitioner, Hypergraph partitioning with fixed cells, Multi-constraint hypergraph partitioner...
  • NASA-VOF2D

  • Referenced in 35 articles [sw12161]
  • wall adhesion. It also has a partial cell treatment that allows curved boundaries and internal...
  • CompuCell3D

  • Referenced in 17 articles [sw34248]
  • Glazier-Graner-Hogeweg (GGH) model, a cell-oriented framework designed to simulate growth and pattern ... formation due to biological cells’ behaviors. We show how to develop such a simulation, based ... bacterial biofilm, and study the roles of cell-cell and cell-field interactions in determining ... which generalize the PLH model by treating cells as spatially extended, deformable bodies, differential adhesion...