
COMBIgor
 Referenced in 1 article
[sw28386]
 COMBIgor: data analysis package for combinatorial materials science. Combinatorial experiments involve synthesis of sample libraries ... modern combinatorial laboratory produces diverse and complex data sets requiring advanced analysis and visualization techniques ... from combinatorial libraries, (2) routines for streamlined data processing, and (3) data analysis and visualization ... dataprocessing algorithms. Utilizing the capabilities of COMBIgor can significantly reduce the burden of data...

OCOTILLO
 Referenced in 10 articles
[sw09292]
 computational complexity analysis for problems arising in the design of combinatorial libraries for drug discovery ... reconstruction problems  related to the design of combinatorial libraries. These are the first rigorous algorithmic ... combinatorial chemistry software package OCOTILLO for combinatorial peptide design using real data libraries. The package...

FASTAptamer
 Referenced in 1 article
[sw28242]
 Selections. Highthroughput sequence (HTS) analysis of combinatorial selection populations accelerates lead discovery and optimization ... whereas lowfitness sequences are depleted. HTS analysis readily provides the requisite numerical information ... response to selection pressures. Unlike genomic data, for which a number of software solutions exist ... tools are not readily available for the combinatorial selections field, leading many users to create...

DJL
 Referenced in 1 article
[sw15798]
 test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), productivity evaluation ... measures: DDF (directional distance function), DEA (data envelopment analysis), SBM (slackbased measure...

QAPgrid
 Referenced in 1 article
[sw23152]
 scale data analysis and visualization. BACKGROUND: The visualization of large volumes of data ... application of new algorithms and models from combinatorial optimisation. Datasets often contain ”hidden regularities ... present them in a way that helps analysis. While several methodologies exist, including those that ... objects. METHODOLOGY/PRINCIPAL FINDINGS: We present a new data visualization approach (QAPgrid) that reveals patterns...

BicPAM
 Referenced in 3 articles
[sw26972]
 BicPAM: Patternbased biclustering for biomedical data analysis. Biclustering, the discovery of sets of objects ... with a set of properties. The challenging combinatorial nature of this task...

DeepChrome
 Referenced in 1 article
[sw15813]
 multiple methods that separate predictions and combinatorial analysis. This paper develops a unified discriminative framework ... classify gene expression using histone modification data as input. Our system, called DeepChrome, allows automatic ... among important features. To simultaneously visualize the combinatorial interactions among histone modifications, we propose...

HapCol
 Referenced in 1 article
[sw23964]
 able to deal with such data in a fully satisfactory way, either because accuracy ... experimental analysis, comparing HapCol with the current stateoftheart combinatorial methods both ... real and simulated data. On a standard benchmark of real data, we show that HapCol...

CCGbank
 Referenced in 4 articles
[sw08022]
 Penn Treebank into a corpus of combinatory categorial grammar (CCG) derivations augmented with local ... Treebank. It is available from the Linguistic Data Consortium, and has been used to train ... inconsistencies in the original annotation, an extensive analysis of the constructions and annotations...

FCTLBO
 Referenced in 1 article
[sw22855]
 unmixing problem is transformed into a combinatorial optimisation problem by introducing abundance ... abundance nonnegative constraint. A comparative analysis of the proposed algorithm is conducted with other ... noise ratio on simulated and real hyperspectral data demonstrate that the proposed method outperforms...

ADOLC
 Referenced in 233 articles
[sw00019]
 ADOLC: Automatic Differentiation of C/C++. We present...

ATLAS
 Referenced in 197 articles
[sw00056]
 This paper describes the Automatically Tuned Linear Algebra...

BARON
 Referenced in 311 articles
[sw00066]
 BARON is a computational system for solving nonconvex...

cdd
 Referenced in 110 articles
[sw00114]
 The program cdd+ (cdd, respectively) is a C...

CGAL
 Referenced in 355 articles
[sw00118]
 The goal of the CGAL Open Source Project...

CoCoA
 Referenced in 621 articles
[sw00143]
 CoCoA is a system for Computations in Commutative...

Coq
 Referenced in 1784 articles
[sw00161]
 Coq is a formal proof management system. It...

CSDP
 Referenced in 197 articles
[sw00169]
 CSDP, A C Library for Semidefinite Programming. This...

CXSC 2.0
 Referenced in 123 articles
[sw00182]
 A C++ class library for extended scientific computing...

EOlib
 Referenced in 19 articles
[sw00239]
 EO is a templatebased, ANSIC++ evolutionary...