• COMBIgor

  • Referenced in 1 article [sw28386]
  • COMBIgor: data analysis package for combinatorial materials science. Combinatorial experiments involve synthesis of sample libraries ... modern combinatorial laboratory produces diverse and complex data sets requiring advanced analysis and visualization techniques ... from combinatorial libraries, (2) routines for streamlined data processing, and (3) data analysis and visualization ... data-processing algorithms. Utilizing the capabilities of COMBIgor can significantly reduce the burden of data...
  • OCOTILLO

  • Referenced in 10 articles [sw09292]
  • computational complexity analysis for problems arising in the design of combinatorial libraries for drug discovery ... reconstruction problems -- related to the design of combinatorial libraries. These are the first rigorous algorithmic ... combinatorial chemistry software package OCOTILLO for combinatorial peptide design using real data libraries. The package...
  • FASTAptamer

  • Referenced in 1 article [sw28242]
  • Selections. High-throughput sequence (HTS) analysis of combinatorial selection populations accelerates lead discovery and optimization ... whereas low-fitness sequences are depleted. HTS analysis readily provides the requisite numerical information ... response to selection pressures. Unlike genomic data, for which a number of software solutions exist ... tools are not readily available for the combinatorial selections field, leading many users to create...
  • DJL

  • Referenced in 1 article [sw15798]
  • test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), productivity evaluation ... measures: DDF (directional distance function), DEA (data envelopment analysis), SBM (slack-based measure...
  • QAPgrid

  • Referenced in 1 article [sw23152]
  • scale data analysis and visualization. BACKGROUND: The visualization of large volumes of data ... application of new algorithms and models from combinatorial optimisation. Datasets often contain ”hidden regularities ... present them in a way that helps analysis. While several methodologies exist, including those that ... objects. METHODOLOGY/PRINCIPAL FINDINGS: We present a new data visualization approach (QAPgrid) that reveals patterns...
  • BicPAM

  • Referenced in 3 articles [sw26972]
  • BicPAM: Pattern-based biclustering for biomedical data analysis. Biclustering, the discovery of sets of objects ... with a set of properties. The challenging combinatorial nature of this task...
  • DeepChrome

  • Referenced in 1 article [sw15813]
  • multiple methods that separate predictions and combinatorial analysis. This paper develops a unified discriminative framework ... classify gene expression using histone modification data as input. Our system, called DeepChrome, allows automatic ... among important features. To simultaneously visualize the combinatorial interactions among histone modifications, we propose...
  • HapCol

  • Referenced in 1 article [sw23964]
  • able to deal with such data in a fully satisfactory way, either because accuracy ... experimental analysis, comparing HapCol with the current state-of-the-art combinatorial methods both ... real and simulated data. On a standard benchmark of real data, we show that HapCol...
  • CCGbank

  • Referenced in 4 articles [sw08022]
  • Penn Treebank into a corpus of combinatory categorial grammar (CCG) derivations augmented with local ... Treebank. It is available from the Linguistic Data Consortium, and has been used to train ... inconsistencies in the original annotation, an extensive analysis of the constructions and annotations...
  • FC-TLBO

  • Referenced in 1 article [sw22855]
  • unmixing problem is transformed into a combinatorial optimisation problem by introducing abundance ... abundance non-negative constraint. A comparative analysis of the proposed algorithm is conducted with other ... noise ratio on simulated and real hyperspectral data demonstrate that the proposed method outperforms...
  • ADOL-C

  • Referenced in 233 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • ATLAS

  • Referenced in 197 articles [sw00056]
  • This paper describes the Automatically Tuned Linear Algebra...
  • BARON

  • Referenced in 311 articles [sw00066]
  • BARON is a computational system for solving nonconvex...
  • cdd

  • Referenced in 110 articles [sw00114]
  • The program cdd+ (cdd, respectively) is a C...
  • CGAL

  • Referenced in 355 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • CoCoA

  • Referenced in 621 articles [sw00143]
  • CoCoA is a system for Computations in Commutative...
  • Coq

  • Referenced in 1784 articles [sw00161]
  • Coq is a formal proof management system. It...
  • CSDP

  • Referenced in 197 articles [sw00169]
  • CSDP, A C Library for Semidefinite Programming. This...
  • C-XSC 2.0

  • Referenced in 123 articles [sw00182]
  • A C++ class library for extended scientific computing...
  • EOlib

  • Referenced in 19 articles [sw00239]
  • EO is a template-based, ANSI-C++ evolutionary...