• Matlab

  • Referenced in 11649 articles [sw00558]
  • test and measurement, computational finance, and computational biology. More than a million engineers and scientists ... academia use MATLAB, the language of technical computing...
  • FGb

  • Referenced in 235 articles [sw00286]
  • state-of-the-art algorithms for computing Gröbner bases: actually, from a research point ... various applications (Robotic, Signal Theory, Biology, Computational Geometry, . . . ) and more recently to a wide range...
  • KEGG

  • Referenced in 241 articles [sw13866]
  • high-level functions and utilities of the biological system, such as the cell, the organism ... level information. It is a computer representation of the biological system, consisting of molecular building...
  • SHOGUN

  • Referenced in 95 articles [sw03517]
  • this toolbox in several applications from computational biology, some of them coming with no less...
  • CGAL

  • Referenced in 344 articles [sw00118]
  • scientific visualization, computer aided design and modeling, geographic information systems, molecular biology, medical imaging, robotics ... projects using CGAL web page. The Computational Geometry Algorithms Library (CGAL), offers data structures...
  • Pse-in-One

  • Referenced in 41 articles [sw22407]
  • protein sequences. With the avalanche of biological sequences generated in the post-genomic ... most challenging problems in computational biology is how to effectively formulate the sequence ... develop computational predictors and analysis methods for various tasks in bioinformatics and system biology ... very useful tool in computational proteomics, genomics, as well as biological sequence analysis. Moreover...
  • PDB2PQR

  • Referenced in 33 articles [sw13087]
  • output compatible with several popular computational biology packages. This service is intended to facilitate...
  • Bio-PEPA

  • Referenced in 102 articles [sw01361]
  • performanceanalysis of computer systems, in order to handle some features of biological models, suchas stoichiometry...
  • Biopython

  • Referenced in 16 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular biology and bioinformatics. Biopython ... freely available tools for biological computation written in Python by an international team of developers...
  • CMA-ES

  • Referenced in 100 articles [sw05063]
  • evolutionary computation. An evolutionary algorithm is broadly based on the principle of biological evolution, namely...
  • Fiji

  • Referenced in 20 articles [sw09754]
  • popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering ... platform for productive collaboration between computer science and biology research communities...
  • PHYLIP

  • Referenced in 95 articles [sw07694]
  • Genome Sciences and the Department of Biology at the University of Washington, contain information ... executables, source code and documentation to your computer...
  • LSTM

  • Referenced in 24 articles [sw03373]
  • without a teacher. They are computationally more powerful and biologically more plausible than other adaptive...
  • Virtual Cell

  • Referenced in 7 articles [sw22589]
  • Virtual Cell: a software environment for computational cell biology. The newly emerging field of computational ... broad community of scientists. Cell biological processes are controlled by an interacting set of biochemical ... that are distributed within complex cellular structures. Computational modeling is familiar to researchers in fields ... whole. The Virtual Cell is a computational environment designed for cell biologists as well...
  • Lynx

  • Referenced in 8 articles [sw13643]
  • Lynx through a case-study from computational biology, namely, the RNA secondary structure prediction problem...
  • DSTool

  • Referenced in 101 articles [sw06719]
  • systems arise in many disciplins of physics, biology and chemistry - basically always whenever something ... theory of dynamical systems allow to compute important properties directly without the need for long...
  • sbtoolbox

  • Referenced in 16 articles [sw07391]
  • Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology. We present...
  • PoCaB

  • Referenced in 7 articles [sw06416]
  • KEGG. The computations involve the use of computer algebra tools (e.g. polco, polymake). The results ... database called PoCaB (Platform of Chemical and Biological data). We also present a visualization program ... development of methods relevant for computational systems biology involving computer algebra. The database is publicly...
  • blockcluster

  • Referenced in 7 articles [sw17883]
  • core library and the R statistical computing environment. This package allows to co-cluster binary ... fields of Data mining, Information retrieval, Biology, computer vision and many more. More information about...
  • VMD

  • Referenced in 83 articles [sw18651]
  • graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows ... designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid ... molecule undergoing simulation on a remote computer...