• GEST

  • Referenced in 2 articles [sw29592]
  • searches depend crucially on the metric used to assess the similarity between pairs of experiments...
  • OXBench

  • Referenced in 5 articles [sw22988]
  • utility of any prediction is completely dependent on the accuracy of the alignment. In this ... methods such as CLUSTALW once the PAM250 pair-score matrix was replaced by a BLOSUM ... sequence alignment techniques. Evaluation measures that were dependent on comparison to a reference alignment were ... accuracy seen since 1985 stems from improved pair-score matrices rather than algorithmic refinements...
  • TPMSVM

  • Referenced in 9 articles [sw12692]
  • determines indirectly the separating hyperplane through a pair of nonparallel parametric-margin hyperplanes solved ... error structure, that is, the noise strongly depends on the input value. But there...
  • Paramotopy

  • Referenced in 11 articles [sw08781]
  • Bertini’s implementation of user-defined homotopies, paired with Boost and other libraries ... equilibria of a biochemical reaction network depends on the choice of a number of parameter...
  • sdt

  • Referenced in 1 article [sw16956]
  • features, we provide statistical measures for ‘density-dependent’ interactions, as well as a mechanism ... pairing correlations) within a general Hamiltonian. The program handles the radial degeneracy for ‘density-dependent...
  • ERBlox

  • Referenced in 3 articles [sw28909]
  • representations. Relatively recently, declarative rules called matching dependencies (MDs) have been proposed for specifying similarity ... Classifiers for duplicate/non-duplicate record pairs built using machine learning (ML) techniques, (b) MDs for supporting...
  • ScaffMatch

  • Referenced in 4 articles [sw23973]
  • During this stage, contigs assembled from the paired-end reads are merged into bigger chains ... vary in their quality and are highly dependent on the read data quality and genome...
  • CNVassoc

  • Referenced in 2 articles [sw19389]
  • designs (case-control, cohort, etc), using several dependent variables (class status, censored data, counts ... possible to perform epistasis studies with pairs of CNVs or imputed SNPs. It has been...
  • TreeCANN

  • Referenced in 2 articles [sw27578]
  • need to repeatedly measure similarity between pairs of patches. As a by-product we give ... faster than previously reported results and depends only on the size of the images...
  • powerpkg

  • Referenced in 2 articles [sw25736]
  • testing for linkage using an affected sib pair design, as a function of the recurrence ... power of the transmission disequilibrium test (TDT) depends on the disease allele frequency, the marker...
  • Bisulfighter

  • Referenced in 3 articles [sw23508]
  • detect differentially methylated regions (DMRs) between paired samples. Although numerous tools have been proposed ... Markov models (HMMs). Unlike previous attempts that depend on empirical parameters, Bisulfighter...
  • Photos++

  • Referenced in 1 article [sw22634]
  • event record interface necessary for process dependent photon emission kernel is implemented. It is used ... decays. Additional emission of final state lepton pairs is also available. Physics assumptions used...
  • ODEA

  • Referenced in 3 articles [sw07671]
  • Minimum cost disjoint paths under arc dependences. Algorithms for practice. In this thesis, we develop ... arc/edge costs and a set of node pairs in it. A feasible solution ... connecting paths, one for each node pair, such that two conditions are satisfied ... introduce a new modelling technique called arc dependences. It generalizes the traditional notion of disjointness...
  • gmspoly.lib

  • Referenced in 1 article [sw31083]
  • rise to atypical values in a sense depending on the precise notion of tameness considered ... consequence, it yields the Hodge numbers, spectral pairs, and monodromy at infinity...
  • ACL2

  • Referenced in 262 articles [sw00060]
  • ACL2 is both a programming language in which...
  • AXIOM

  • Referenced in 168 articles [sw00063]
  • Axiom is a general purpose Computer Algebra system...
  • CoCoA

  • Referenced in 584 articles [sw00143]
  • CoCoA is a system for Computations in Commutative...
  • Coq

  • Referenced in 1697 articles [sw00161]
  • Coq is a formal proof management system. It...
  • CSDP

  • Referenced in 188 articles [sw00169]
  • CSDP, A C Library for Semidefinite Programming. This...
  • Cuba

  • Referenced in 50 articles [sw00173]
  • Cuba -- a library for multidimensional numerical integration. The...