
ToxDB
 Referenced in 0 articles
[sw29374]
 interpretation of drugtreatment data. Motivation: Extensive drug treatment gene expression data have been generated ... order to identify biomarkers that are predictive for toxicity or to classify compounds. However, such ... used to assess toxicity for entire classes of drugs more reliably. Results: We have developed...

Matlab
 Referenced in 12074 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

R
 Referenced in 8359 articles
[sw00771]
 R is a language and environment for statistical...

Graphviz
 Referenced in 81 articles
[sw01283]
 Graphviz is open source graph visualization software. Graph...

COMSOL
 Referenced in 367 articles
[sw04091]
 The COMSOL Multiphysics engineering simulation software environment facilitates...

Bioconductor
 Referenced in 298 articles
[sw04205]
 Bioconductor provides tools for the analysis and comprehension...

LSODE
 Referenced in 128 articles
[sw04374]
 LSODE (Livermore Solver for Ordinary Differential Equations) solves...

WinBUGS
 Referenced in 699 articles
[sw04492]
 WinBUGS is part of the BUGS project, which...

gplots
 Referenced in 6 articles
[sw04555]
 gplots: Various R Programming Tools for Plotting Data...

PLINK
 Referenced in 61 articles
[sw04581]
 PLINK is a free, opensource whole genome...

gcrma
 Referenced in 95 articles
[sw06104]
 Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...

SAS
 Referenced in 1464 articles
[sw06377]
 SAS (Statistical Analysis System) is an integrated system...

edgeR
 Referenced in 46 articles
[sw06936]
 edgeR: a Bioconductor package for differential expression analysis...

igraph
 Referenced in 150 articles
[sw07066]
 The igraph software package for complex network research...

WGCNA
 Referenced in 17 articles
[sw07123]
 R package WGCNA: Weighted Correlation Network Analysis. Functions...

BoolNet
 Referenced in 14 articles
[sw07365]
 BoolNet: Generation, reconstruction, simulation and analysis of synchronous...

BUGS
 Referenced in 358 articles
[sw07885]
 The BUGS (Bayesian inference Using Gibbs Sampling) project...

NLPQL
 Referenced in 130 articles
[sw08457]
 NLPQL: a Fortran subroutine for solving constrained nonlinear...

Cytoscape
 Referenced in 69 articles
[sw09080]
 Cytoscape: A Software Environment for Integrated Models of...