• Simulink

  • Referenced in 721 articles [sw04348]
  • multidomain simulation and Model-Based Design for dynamic and embedded systems. It provides an interactive ... time-varying systems, including communications, controls, signal processing, video processing, and image processing. Simulink...
  • NESTA

  • Referenced in 120 articles [sw06576]
  • Comprehensive numerical experiments on realistic signals exhibiting a large dynamic range show that this algorithm...
  • PhysioToolkit

  • Referenced in 119 articles [sw15476]
  • growing library of software for physiologic signal processing and analysis, detection of physiologically significant events ... statistical physics and nonlinear dynamics, interactive display and characterization of signals, creation of new databases...
  • BioNetGen

  • Referenced in 53 articles [sw09072]
  • BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular ... computational model that characterizes the dynamics of a signal transduction system, and that accounts comprehensively...
  • Scilab

  • Referenced in 166 articles [sw00834]
  • study Signal Processing: Visualize, analyze and filter signals in time and frequency domains. Application Development ... data exchanges with external tools. Xcos - Hybrid dynamic systems modeler and simulator: Modeling mechanical systems...
  • iSNO-AAPair

  • Referenced in 24 articles [sw22447]
  • including the regulation of cellular dynamics and many signaling events. Knowledge of SNO sites...
  • gNCA

  • Referenced in 4 articles [sw08821]
  • structure-driven framework for deducing regulatory signal dynamics. In contrast to classical approaches such ... gene knockouts that constrain the dynamics of regulatory signals. The ability of incorporating such information...
  • Scicos

  • Referenced in 19 articles [sw01941]
  • hybrid dynamical systems and compile models into executable code. Scicos is used for signal processing...
  • LBIBCell

  • Referenced in 3 articles [sw21532]
  • simultaneous and coupled simulation of signalling and tissue dynamics. A cellular resolution of the tissue ... division, cell–cell interactions and spatially restricted signalling events. A tightly coupled cell-based mechano ... application examples we simulate signalling-dependent tissue dynamics. Availability and implementation: The documentation and source...
  • SIMA

  • Referenced in 1 article [sw19189]
  • powerful method for monitoring dynamic signals in the nervous system. However, analysis of dynamic fluorescence ... regions of interest (ROIs), and extraction of signals from the segmented ROIs. We have also...
  • SimBoolNet

  • Referenced in 2 articles [sw35190]
  • source Cytoscape plugin for simulating the dynamics of signaling transduction using Boolean networks...
  • Evolino

  • Referenced in 17 articles [sw36450]
  • their ability to model non-linear dynamical systems. Most supervised gradient-based recurrent neural networks ... RNNs) suffer from a vanishing error signal that prevents learning from inputs...
  • E-CELL

  • Referenced in 22 articles [sw07917]
  • simulating intracellular molecular processes to predict the dynamic behavior of living cells. Previous work ... cell that incorporate gene regulation, metabolism and signaling have not been established. We, therefore, were ... user can observe, through a computer display, dynamic changes in concentrations of proteins, protein complexes...
  • DOTcvpSB

  • Referenced in 4 articles [sw07305]
  • achieve a desired dynamic behavior, e.g. stimulate a cell signaling cascade to maximize amplitude strength ... defined performance index subject to the system dynamics and other possible constraints...
  • QSSPN

  • Referenced in 1 article [sw30010]
  • QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism ... feasibility of qualitative dynamic behaviours in qualitative models of gene regulation, signalling and whole-cell...
  • Cell Illustrator

  • Referenced in 4 articles [sw06594]
  • metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various...
  • Structural Dynamics Toolbox

  • Referenced in 3 articles [sw14620]
  • Structural Dynamics Toolbox enhances MATLAB® core capabilities in controls and signal processing through extensions linked...
  • IODINE

  • Referenced in 2 articles [sw26817]
  • automatically extract likely design properties using dynamic analysis. A practical bottleneck in the formal verification ... mutual exclusion between signals from design simulations. We show that dynamic invariant detection for hardware...
  • SegAnnot

  • Referenced in 1 article [sw32353]
  • annotated piecewise constant signals. Annotation-aware segmentation via dynamic programming. We assume a complete...