• iRNA-AI

  • Referenced in 26 articles [sw24437]
  • identifying the adenosine to inosine editing sites in RNA sequences. Catalyzed by adenosine deaminase (ADAR ... adenosine to inosine (A-to-I) editing in RNA is not only involved in various ... knowledge about the A-to-I editing sites in RNA is crucially important for both ... them can be of A-to-I editing, and which one cannot? Unfortunately...
  • ExpEdit

  • Referenced in 2 articles [sw17165]
  • assessing RNA editing in human at known or user-specified sites supported by transcript data ... against a large collection of known editing sites collected in DARNED database as well...
  • REDItools

  • Referenced in 1 article [sw17150]
  • Summary: The reliable detection of RNA editing sites from massive sequencing data remains challenging ... perform high-throughput investigation of RNA editing using next generation sequencing data. Implementation and Availability...
  • EdiPy

  • Referenced in 1 article [sw01955]
  • into account the presence of sites subjected to RNA editing and provides multiple artificial alignments...
  • RNAplex

  • Referenced in 4 articles [sw17143]
  • miRNA as well as snoRNA directed RNA editing rely on this mechanism. Additionally ncRNA regulation ... upon RNA duplex formation. Finding putative target sites for newly discovered ncRNAs is a lengthy...
  • MEGA4

  • Referenced in 7 articles [sw07695]
  • which expands on the existing facilities for editing DNA sequence data from autosequencers, mining ... with and without incorporating rate variation among sites and substitution pattern heterogeneities among lineages. This...
  • Gene Designer

  • Referenced in 4 articles [sw17359]
  • synthetic DNA segments. Users can easily add, edit and combine genetic elements such as promoters ... tools for avoidance or inclusion of restriction sites, and options to maximize or minimize sequence...
  • EnTagRec

  • Referenced in 0 articles [sw27508]
  • information sites, such as Stack Overflow. These sites allow developers to label posted content, referred ... Stack Overflow needed tag re-editing after the initial assignment. Users still need to make ... improve the tags on such software information sites. To improve the quality of tags...
  • UNICASE

  • Referenced in 1 article [sw07898]
  • UNICASE client allows to view and edit these models in a textual, tabular and diagram ... about the UNICASE Project at the official site. The Software Engineering Group has developed several...
  • RNA2D3D

  • Referenced in 1 article [sw17141]
  • pseudoknot content, it features efficient interactive graphical editing for the removal of any overlaps introduced ... viral kissing loops, viral internal ribosome entry sites, and nanobiology are presented...
  • Maple

  • Referenced in 5020 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 5857 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 11969 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • Maxima

  • Referenced in 149 articles [sw00560]
  • Maxima is a system for the manipulation of...
  • R

  • Referenced in 8180 articles [sw00771]
  • R is a language and environment for statistical...
  • SageMath

  • Referenced in 1598 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • STAR

  • Referenced in 12 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • UCI-ml

  • Referenced in 3021 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • SVMlight

  • Referenced in 260 articles [sw04076]
  • Description (homepage): SVMlight is an implementation of Vapnik...
  • CPLEX

  • Referenced in 2541 articles [sw04082]
  • IBM® ILOG® CPLEX® offers C, C++, Java, .NET...