• EBayesThresh

  • Referenced in 113 articles [sw11104]
  • paper ”Needles and straw in haystacks: Empirical Bayes approaches to thresholding a possibly sparse sequence ... Empirical Bayes selection of wavelet thresholds” by Iain M. Johnstone and Bernard W. Silverman, submitted...
  • PROC NLMIXED

  • Referenced in 55 articles [sw11039]
  • predictions of arbitrary functions by using empirical Bayes estimates of the random effects...
  • limma

  • Referenced in 48 articles [sw10458]
  • well as biological replication are considered. Empirical Bayes test statistics are explained...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • both biological and technical variability. Empirical Bayes methods are used to moderate the degree...
  • EBarrays

  • Referenced in 31 articles [sw08355]
  • Parametric Empirical Bayes Methods for Microarrays. We have developed an empirical Bayes methodology for gene...
  • reccv

  • Referenced in 35 articles [sw26388]
  • wide range of classical and empirical Bayes methods treating either individual or blocks of wavelet...
  • spdep

  • Referenced in 29 articles [sw04578]
  • Hubert/Mantel general cross product statistic, Empirical Bayes estimates and Assuncao/Reis Index, Getis/Ord G and multicoloured...
  • multtest

  • Referenced in 20 articles [sw08262]
  • resampling-based multiple testing procedures (including empirical Bayes methods) for controlling the family-wise error...
  • EbayesThresh

  • Referenced in 13 articles [sw11103]
  • package EbayesThresh: Empirical Bayes Thresholding and Related Methods. This package carries out Empirical Bayes thresholding...
  • BaySeq

  • Referenced in 17 articles [sw10343]
  • novel algorithm, baySeq, which uses an empirical Bayes approach to detect these patterns of differential ... distribution for the data and derives an empirically determined prior distribution from the entire dataset...
  • Voom

  • Referenced in 16 articles [sw14009]
  • enters these into the limma empirical Bayes analysis pipeline. This opens access...
  • REBayes

  • Referenced in 9 articles [sw20967]
  • package REBayes: Empirical Bayes Estimation and Inference in R. Kiefer-Wolfowitz maximum likelihood estimation...
  • EBSeq

  • Referenced in 7 articles [sw17161]
  • EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Motivation: Messenger ... Results: Taking advantage of the merits of empirical Bayesian methods, we have developed EBSeq...
  • geoBayes

  • Referenced in 4 articles [sw16727]
  • Geostatistical Data using Bayes and Empirical Bayes Methods. Functions to fit geostatistical data. The data ... full Bayesian analysis of by empirical Bayes methods...
  • ebdbNet

  • Referenced in 4 articles [sw11222]
  • ebdbNet: Empirical Bayes Estimation of Dynamic Bayesian Networks. This package is used to infer ... from time course data using an empirical Bayes estimation procedure based on Dynamic Bayesian Networks...
  • MIXREG

  • Referenced in 5 articles [sw24547]
  • random effects is accomplished using an empirical Bayes approach. Examples illustrating usage and features...
  • BAS

  • Referenced in 5 articles [sw24118]
  • selection criteria include AIC, BIC and Empirical Bayes estimates of g. Sampling probabilities...
  • icmm

  • Referenced in 3 articles [sw21305]
  • package icmm: Empirical Bayes Variable Selection via ICM/M Algorithm. Carries out empirical Bayes variable selection...
  • smoothfdr

  • Referenced in 4 articles [sw27319]
  • smoothfdr). The smoothfdr package provides an empirical-Bayes method for exploiting spatial structure in large...
  • shrink

  • Referenced in 4 articles [sw24100]
  • achieved, e.g., by regularized regression or empirical Bayes approaches. Various types of shrinkage factors...