
Sets2Networks
 Referenced in 1 article
[sw24189]
 entities is determined from indirect evidence. While many algorithms have been developed to infer networks...

SW1PerS
 Referenced in 6 articles
[sw17206]
 those generated with other popular algorithms. Moreover, the list of genes from data ... highlyranked only by SW1PerS, contains evidently noncosine patterns (e.g. ECM33, CDC9, SAM1 ... SW1PerS identifies genes not preferred by other algorithms, hence not previously reported as periodic...

SpeeDP
 Referenced in 4 articles
[sw07003]
 algorithm, called SpeeDP, for finding critical points of the LRSDP problem. We provide evidence ... simply modified version of the GoemansWilliamson algorithm and we show that the corresponding heuristic...

TREKS
 Referenced in 3 articles
[sw22483]
 meanS based algorithm. MOTIVATION: Over the last years a number of evidences have been accumulated ... computer programs which were based on different algorithms have been developed. Nevertheless, our tests showed...

MOCHA
 Referenced in 3 articles
[sw08579]
 multicriteria matroid optimization, we have developed algorithms and heuristics aimed at practical solution of large ... provide computational evidence supporting our techniques. We implemented all of our algorithms in the software...

pMapper
 Referenced in 9 articles
[sw31680]
 present the pMapper architecture and placement algorithms to solve one practical formulation of the problem ... requirement. We present comprehensive theoretical and experimental evidence to establish the efficacy of pMapper...

Signal3L
 Referenced in 16 articles
[sw26857]
 fusing many individual OETKNN (optimized evidencetheoretic K nearest neighbor) classifiers operated in various ... secretory protein by a subsitecoupled discrimination algorithm; (3) determining the final cleavage site...

TreeQA
 Referenced in 1 article
[sw20041]
 genomic regions exhibiting no evidence of historical recombination. By efficient algorithm design and implementation, TreeQA...

TaxiSimulation
 Referenced in 3 articles
[sw35601]
 coupled with a novel and generalizable backbone algorithm, that allows us to dispatch in real ... customers per hour. We provide evidence from historical simulations using New York City routing network ... yellow cab data to show that our algorithms improve upon the performance of existing heuristics...

ChIPPaM
 Referenced in 1 article
[sw22385]
 target regions in ChIPSeq datasets. This algorithm makes full use of a protein ... pattern by capitalizing on three lines of evidence: 1) the tag count modelling ... three lines of evidence to determine significantly enriched regions. Our algorithm requires no technical controls...

CPNest
 Referenced in 1 article
[sw36229]
 likelihood or evidence, 𝑍=∫𝐿 𝑑𝑋. As a byproduct the algorithm produces samples from...

EMILE
 Referenced in 4 articles
[sw19074]
 basic theoretical concepts behind the EMILE algorithm are expressions and contexts. The idea is that ... substitutionability relation. If there exists enough statistical evidence for the existence of a grammatical type ... type. Fundamental notions in the EMILE 4.1 algorithm are the socalled characteristic expressions...

latentnet
 Referenced in 17 articles
[sw10550]
 based on an Markov chain Monte Carlo algorithm. It can also compute maximum likelihood estimates ... groups is 1, there is little evidence for clustering). It also estimates which cluster each...

MPSCAN
 Referenced in 4 articles
[sw35277]
 demonstrate that mpscan also is the fastest algorithm in practice for exact matching. Our accuracy ... inappropriate for read mapping. Moreover, we provide evidence suggesting that exact matching ... reveal useful in the design of future algorithms. The absence of genome index gives mpscan...

DREME
 Referenced in 3 articles
[sw17299]
 maintenance of pluripotency. Several other commonly used algorithms find at most two cofactor motifs ... this feature to provide evidence that Sox2 and Oct4 do not bind in mES cells ... much faster than many commonly used algorithms, scales linearly in dataset size, finds multiple...

DNest4
 Referenced in 3 articles
[sw25767]
 evidence”, is a key quantity in Bayesian model selection. The diffusive nested sampling algorithm...

expansionnetwork
 Referenced in 1 article
[sw34481]
 transcription factor binding evidence. This is implemented by an algorithm which expands a regular Boolean...

Manifold Regularization
 Referenced in 1 article
[sw24840]
 theorems that provide theoretical basis for the algorithms. As a result (in contrast to purely ... settings. We present experimental evidence suggesting that our semisupervised algorithms are able...

BWDifference
 Referenced in 5 articles
[sw23722]
 exponentialpolynomial type. We implement the algorithm in the function BWDifference in the updated Mathematica ... fano CalabiYau threefolds, and find strong evidence that not only are the perturbative eigenenergies...

Socrates
 Referenced in 1 article
[sw34368]
 cancer genomics. Available algorithms use one or more sources of evidence, such as read depth...