• Sets2Networks

  • Referenced in 1 article [sw24189]
  • entities is determined from indirect evidence. While many algorithms have been developed to infer networks...
  • SW1PerS

  • Referenced in 6 articles [sw17206]
  • those generated with other popular algorithms. Moreover, the list of genes from data ... highly-ranked only by SW1PerS, contains evidently non-cosine patterns (e.g. ECM33, CDC9, SAM1 ... SW1PerS identifies genes not preferred by other algorithms, hence not previously reported as periodic...
  • SpeeDP

  • Referenced in 4 articles [sw07003]
  • algorithm, called SpeeDP, for finding critical points of the LRSDP problem. We provide evidence ... simply modified version of the Goemans-Williamson algorithm and we show that the corresponding heuristic...
  • T-REKS

  • Referenced in 3 articles [sw22483]
  • meanS based algorithm. MOTIVATION: Over the last years a number of evidences have been accumulated ... computer programs which were based on different algorithms have been developed. Nevertheless, our tests showed...
  • MOCHA

  • Referenced in 3 articles [sw08579]
  • multicriteria matroid optimization, we have developed algorithms and heuristics aimed at practical solution of large ... provide computational evidence supporting our techniques. We implemented all of our algorithms in the software...
  • pMapper

  • Referenced in 9 articles [sw31680]
  • present the pMapper architecture and placement algorithms to solve one practical formulation of the problem ... requirement. We present comprehensive theoretical and experimental evidence to establish the efficacy of pMapper...
  • Signal-3L

  • Referenced in 16 articles [sw26857]
  • fusing many individual OET-KNN (optimized evidence-theoretic K nearest neighbor) classifiers operated in various ... secretory protein by a subsite-coupled discrimination algorithm; (3) determining the final cleavage site...
  • TreeQA

  • Referenced in 1 article [sw20041]
  • genomic regions exhibiting no evidence of historical recombination. By efficient algorithm design and implementation, TreeQA...
  • TaxiSimulation

  • Referenced in 3 articles [sw35601]
  • coupled with a novel and generalizable backbone algorithm, that allows us to dispatch in real ... customers per hour. We provide evidence from historical simulations using New York City routing network ... yellow cab data to show that our algorithms improve upon the performance of existing heuristics...
  • ChIP-PaM

  • Referenced in 1 article [sw22385]
  • target regions in ChIP-Seq datasets. This algorithm makes full use of a protein ... pattern by capitalizing on three lines of evidence: 1) the tag count modelling ... three lines of evidence to determine significantly enriched regions. Our algorithm requires no technical controls...
  • CPNest

  • Referenced in 1 article [sw36229]
  • likelihood or evidence, 𝑍=∫𝐿 𝑑𝑋. As a by-product the algorithm produces samples from...
  • EMILE

  • Referenced in 4 articles [sw19074]
  • basic theoretical concepts behind the EMILE algorithm are expressions and contexts. The idea is that ... substitutionability relation. If there exists enough statistical evidence for the existence of a grammatical type ... type. Fundamental notions in the EMILE 4.1 algorithm are the so-called characteristic expressions...
  • latentnet

  • Referenced in 17 articles [sw10550]
  • based on an Markov chain Monte Carlo algorithm. It can also compute maximum likelihood estimates ... groups is 1, there is little evidence for clustering). It also estimates which cluster each...
  • MPSCAN

  • Referenced in 4 articles [sw35277]
  • demonstrate that mpscan also is the fastest algorithm in practice for exact matching. Our accuracy ... inappropriate for read mapping. Moreover, we provide evidence suggesting that exact matching ... reveal useful in the design of future algorithms. The absence of genome index gives mpscan...
  • DREME

  • Referenced in 3 articles [sw17299]
  • maintenance of pluripotency. Several other commonly used algorithms find at most two cofactor motifs ... this feature to provide evidence that Sox2 and Oct4 do not bind in mES cells ... much faster than many commonly used algorithms, scales linearly in dataset size, finds multiple...
  • DNest4

  • Referenced in 3 articles [sw25767]
  • evidence”, is a key quantity in Bayesian model selection. The diffusive nested sampling algorithm...
  • expansion-network

  • Referenced in 1 article [sw34481]
  • transcription factor binding evidence. This is implemented by an algorithm which expands a regular Boolean...
  • Manifold Regularization

  • Referenced in 1 article [sw24840]
  • theorems that provide theoretical basis for the algorithms. As a result (in contrast to purely ... settings. We present experimental evidence suggesting that our semi-supervised algorithms are able...
  • BWDifference

  • Referenced in 5 articles [sw23722]
  • exponential-polynomial type. We implement the algorithm in the function BWDifference in the updated Mathematica ... fano Calabi-Yau threefolds, and find strong evidence that not only are the perturbative eigenenergies...
  • Socrates

  • Referenced in 1 article [sw34368]
  • cancer genomics. Available algorithms use one or more sources of evidence, such as read depth...