• AGG

  • Referenced in 49 articles [sw04449]
  • some system model, graph transformation based evolution of software, and the definition of visual languages...
  • iRSpot-TNCPseAAC

  • Referenced in 31 articles [sw22412]
  • system. As a driving force for evolution by generating natural genetic variations, meiotic recombination plays ... meiotic recombination and the process of genome evolution as well. To meet the need...
  • GDE3

  • Referenced in 23 articles [sw18883]
  • GDE3: the third evolution step of generalized differential evolution. A developed version of generalized differential ... evolution, GDE3, is proposed. GDE3 is an extension of differential evolution (DE) for global optimization...
  • ERATO

  • Referenced in 39 articles [sw11922]
  • After perturbation of such an equilibrium, the evolution of the normal modes can be calculated...
  • SIMSON

  • Referenced in 37 articles [sw13385]
  • different subgrid-scale models are available. The evolution of multiple passive scalars can also...
  • Darwin

  • Referenced in 25 articles [sw04175]
  • first implementation of the Model Evolution Calculus (see papers below). The Model Evolution Calculus lifts...
  • MEGA

  • Referenced in 34 articles [sw09078]
  • relationships and patterns of DNA and protein evolution. In addition to the tools for statistical...
  • AFEM@matlab

  • Referenced in 33 articles [sw07764]
  • finite element methods (AFEMs) for stationary and evolution partial differential equations in two spatial dimensions...
  • FacetNet

  • Referenced in 16 articles [sw20426]
  • Framework for Analyzing Communities and Their Evolutions in Dynamic Networks. We discover communities from social ... network data, and analyze the community evolution. These communities are inherent characteristics of human interaction ... traditional two-step approach to analyze community evolutions. In the traditional approach, communities are first ... propose FacetNet for analyzing communities and their evolutions through a robust unified process. In this...
  • iLoc-Virus

  • Referenced in 31 articles [sw22417]
  • gene ontology information with the sequential evolution information, a predictor called iLoc-Virus is developed...
  • ProtIdent

  • Referenced in 21 articles [sw16647]
  • types by fusing functional domain and sequential evolution information. Proteases are vitally important to life ... fusing the functional domain and sequential evolution information: the first layer is for identifying...
  • BIONJ

  • Referenced in 29 articles [sw08301]
  • model trees and the conditions of evolution tested, the topological error reduction...
  • iRSpot-EL

  • Referenced in 29 articles [sw24776]
  • meiotic recombination and the process of genome evolution. RESULTS: To address such a challenge...
  • phytools

  • Referenced in 13 articles [sw10003]
  • ancestral state estimation; visual simulation of trait evolution; fitting models of trait evolution with multiple ... correlations; visualizing discrete and continuous character evolution using colors or projections into trait space; identifying ... change in the rate of character evolution on the tree; fast Brownian motion simulation ... under several other models of continuous trait evolution; fitting a model of correlated binary trait...
  • SuSpect

  • Referenced in 25 articles [sw00933]
  • important features such as the renormalization group evolution of parameters between low and high energy...
  • AHFinderDirect

  • Referenced in 25 articles [sw04972]
  • each slice of a time evolution. A number of AH finders are available, but they...
  • REAP

  • Referenced in 25 articles [sw24720]
  • REAP (Renormalization group Evolution of Angles and Phases) is a Mathematica package for solving...
  • VCFEM-HOMO

  • Referenced in 25 articles [sw35054]
  • analysis is invoked to depict the true evolution of microstructural state variables. Various numerical examples...
  • PDE-Net

  • Referenced in 25 articles [sw36963]
  • present an initial attempt to learn evolution PDEs from data. Inspired by the latest development...
  • PANTHER

  • Referenced in 15 articles [sw22973]
  • PANTHER in 2013: modeling the evolution of gene function, and other gene attributes ... designed to represent gene family evolution, including inference of evolutionary events, such as speciation ... loss of function by ancestral genes during evolution. Finally, PANTHER now includes stable database identifiers...