• Omics Pipe

  • Referenced in 1 article [sw26801]
  • computational framework that automates multi-omics data analysis pipelines on high performance compute clusters ... miRNA-seq, Exome-seq, Whole-Genome sequencing, ChIP-seq analyses and automatic processing of data ... open source and extensible next generation sequencing analysis. The goal of Omics Pipe...
  • Strelka

  • Referenced in 1 article [sw31866]
  • sample pairs. Motivation: Whole genome and exome sequencing of matched tumor–normal sample pairs ... consequent increased demand for somatic variant analysis of paired samples requires methods specialized to model...
  • FFBSKAT

  • Referenced in 1 article [sw23136]
  • based sequence kernel association testing, namely, ASKAT and famSKAT, using the Genetic Analysis Workshop ... similarly accurate. With respect to the available analysis modes, we combined the advantages of both ... easy-to-use method to perform whole-exome kernel machine-based regression association analysis...
  • R

  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...
  • NEURON

  • Referenced in 178 articles [sw03059]
  • Parallel network simulations with NEURON. The NEURON simulation...
  • Bioconductor

  • Referenced in 298 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • Rfam

  • Referenced in 33 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • Rnamotif

  • Referenced in 10 articles [sw04638]
  • The rnamotif program [1] searches a database for...
  • LIBSVM

  • Referenced in 1088 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • WEKA

  • Referenced in 287 articles [sw06435]
  • WEKA: Waikato Environment for Knowledge Analysis. WEKA is...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • Biopython

  • Referenced in 16 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • minet

  • Referenced in 7 articles [sw08432]
  • minet: A R/Bioconductor Package for Inferring Large Transcriptional...
  • Spikenet

  • Referenced in 12 articles [sw08892]
  • SpikeNET: an event-driven simulation package for modelling...
  • DEseq

  • Referenced in 48 articles [sw10344]
  • DESeq: Differential gene expression analysis based on the...
  • Sylamer

  • Referenced in 2 articles [sw11231]
  • Sylamer is a system for finding significantly over...
  • COPASI

  • Referenced in 62 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...
  • SimpleMKL

  • Referenced in 62 articles [sw12290]
  • SimpleMKL. Multiple kernel learning (MKL) aims at simultaneously...
  • CFinder

  • Referenced in 23 articles [sw12379]
  • CFinder: locating cliques and overlapping modules in biological...
  • iPARTS

  • Referenced in 4 articles [sw13839]
  • iPARTS: an improved tool of pairwise alignment of...