• RegulonDB

  • Referenced in 46 articles [sw25948]
  • origin of their effectors and by gene ontology class. We have now computational predictions ... accessed through overviews of correlations about gene regulation. RegulonDB associated original literature, together with more...
  • iLoc-Virus

  • Referenced in 31 articles [sw22417]
  • label scale” and by hybridizing the gene ontology information with the sequential evolution information...
  • pLoc-mEuk

  • Referenced in 30 articles [sw24440]
  • mEuk” by extracting the key GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...
  • pLoc-mPlant

  • Referenced in 27 articles [sw25191]
  • mPlant” by extracting the optimal GO (Gene Ontology) information into the Chou’s general PseAAC...
  • Plant-mPLoc

  • Referenced in 27 articles [sw22435]
  • mPLoc” is developed by integrating the gene ontology information, functional domain information, and sequential evolutionary...
  • FatiGO

  • Referenced in 18 articles [sw12318]
  • tool for finding significant associations of Gene ontology terms with groups of genes. Summary ... simple but powerful procedure to extract Gene Ontology (GO) terms that are significantly over...
  • GOstat

  • Referenced in 18 articles [sw10975]
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes. Summary: Modern experimental techniques ... genes in this list. The Gene-Ontology (GO) database provides a useful tool to annotate ... functions of a large number of genes. Here, we introduce a tool that utilizes this...
  • pLoc-mVirus

  • Referenced in 24 articles [sw24439]
  • mVirus” by extracting the optimal GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...
  • pLoc-mGneg

  • Referenced in 23 articles [sw25190]
  • Gram-negative bacterial proteins by deep gene ontology learning via general PseAAC. Information...
  • BiNGO

  • Referenced in 13 articles [sw13896]
  • Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks. Summary: The Biological ... Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene ... Ontology (GO) terms are significantly overrepresented in a set of genes. BiNGO can be used...
  • pLoc-mHum

  • Referenced in 21 articles [sw27661]
  • mHum’ by extracting the crucial GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...
  • Euk-PLoc

  • Referenced in 21 articles [sw22420]
  • hybridizing the information derived from the gene ontology database and amphiphilic pseudo amino acid composition...
  • Hum-PLoc

  • Referenced in 19 articles [sw26863]
  • samples are expressed by hybridizing the gene ontology (GO) database and amphiphilic pseudo amino acid...
  • iLoc-Gpos

  • Referenced in 18 articles [sw22418]
  • well as hybridizing the information of gene ontology and the sequential evolution information, a novel...
  • GeneRank

  • Referenced in 16 articles [sw27064]
  • network structure derived from gene annotations (gene ontologies) or expression profile correlations. Using both simulated ... algorithm offers an improved ranking of genes compared to pure expression change rankings. Conclusion...
  • SMART

  • Referenced in 16 articles [sw17187]
  • ability to query SMART by Gene Ontology terms, improved structure database searching and batch retrieval...
  • PseAAC-General

  • Referenced in 16 articles [sw22430]
  • general PseAAC, such as the gene ontology mode, the functional domain mode, and the sequential...
  • Gneg-mPLoc

  • Referenced in 16 articles [sw25879]
  • proteins. By incorporating the information of gene ontology, functional domain, and sequential evolution...
  • GOTM

  • Referenced in 9 articles [sw13869]
  • interpreting sets of interesting genes using Gene Ontology hierarchies. Microarray and other high-throughput technologies ... tree-like structure to navigate the Gene Ontology Directed Acyclic Graph for input gene sets ... users to identify the most important Gene Ontology categories for the input gene sets...
  • PANTHER

  • Referenced in 12 articles [sw22973]
  • used to define HMMs, but gene ontology functional annotations can now be made ... gain and loss of function by ancestral genes during evolution. Finally, PANTHER now includes stable...