• PolyGP

  • Referenced in 4 articles [sw08440]
  • PolyGP: A polymorphic genetic programming system in haskell. In general, the machine learning process ... problem solution. For example, monomorphic typed Genetic Programming (GP) uses type information to reduce ... suitable for inputs with the specified type. Polymorphic typed GP improves over monomorphic and untyped...
  • LEA

  • Referenced in 1 article [sw25208]
  • ancestral populations (snmf, pca); and identifying genetic polymorphisms that exhibit high correlation with some environmental...
  • ShapePheno

  • Referenced in 1 article [sw14414]
  • groups and can be mapped to polymorphic genetic loci of the sample set. Availability: Code...
  • 4P

  • Referenced in 1 article [sw29496]
  • fast computing of population genetics statistics from large DNA polymorphism panels. Massive DNA sequencing ... amount of data available for population genetics and molecular ecology studies. However, the parallel computation ... between populations from large panels of polymorphic sites is not yet available, making the exploratory ... polymorphism panels), a stand‐alone software program for the rapid computation of genetic variation statistics...
  • BIGDAWG

  • Referenced in 0 articles [sw16563]
  • case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data ... Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids...
  • MDR

  • Referenced in 9 articles [sw22494]
  • being described in remarkable numbers. Determining which polymorphisms and which environmental factors are associated with ... partly because the effect of any single genetic variation will likely be dependent on other...
  • compareGroups

  • Referenced in 1 article [sw17998]
  • normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing...
  • LdCompare

  • Referenced in 3 articles [sw35371]
  • genetic-variation datasets has increased enormously and the linkage equilibrium (LD) structure of these polymorphisms...
  • PGEToolbox

  • Referenced in 1 article [sw12455]
  • software package for data analysis in population genetics. The main features of this software ... capability for handling both DNA sequence polymorphisms and single ... nucleotide polymorphisms (SNPs), which include genotype and haplotype data; 2) exhaustive population genetic analyses...
  • ABySS

  • Referenced in 12 articles [sw17343]
  • individual human genomes to catalog natural genetic variation. To address this limitation, we developed ABySS ... human genome. Analysis of these contigs identified polymorphic and novel sequences not present...
  • minPtest

  • Referenced in 2 articles [sw11394]
  • genetic case-control studies. Current technologies generate a huge number of single nucleotide polymorphism...
  • CoreSNP

  • Referenced in 2 articles [sw20558]
  • genetic variation on drug response in patients and correlates gene expression or single nucleotide polymorphisms...
  • AssocTests

  • Referenced in 1 article [sw16007]
  • stratification through searching for the eigenvectors in genetic association studies), PCoC (a procedure for correcting ... association between a single nucleotide polymorphism and a binary phenotype using the maximum value ... testing for the association between a genetic variant and a non-normal distributed quantitative trait ... association between a biallelic single nucleotide polymorphism and a quantitative trait using the maximum value...
  • WhatsHap

  • Referenced in 4 articles [sw23105]
  • diploid, which requires assigning heterozygous single nucleotide polymorphisms (SNPs) to the two copies ... crucial for downstream analyses in population genetics. Currently, statistical approaches, which are oblivious to direct...
  • GATK

  • Referenced in 14 articles [sw12019]
  • Project, are already revolutionizing our understanding of genetic variation among individuals. However, the massive data ... tools like coverage calculators and single nucleotide polymorphism (SNP) calling. We conclude that the GATK...
  • GWAF

  • Referenced in 1 article [sw19000]
  • nucleotide polymorphisms (SNPs) and a binary or continuous trait with user specified genetic model...
  • NGS

  • Referenced in 1 article [sw29692]
  • Whole genome single nucleotide polymorphism genotyping of Staphylococcus aureus. Next-generation sequencing technology enables routine ... bacterial pathogens for clinical diagnostics and genetic research. Whole genome sequencing has been of importance ... whole genome sequencing-based single nucleotide polymorphism (SNP) genotyping method and apply to the evolutionary...
  • PedGenie

  • Referenced in 4 articles [sw35514]
  • individuals to be analyzed together, to test genetic markers and qualitative or quantitative traits ... role of two tagging-single nucleotide polymorphisms (tSNPs) in the DNA repair gene, NBS1...
  • Arlequin

  • Referenced in 4 articles [sw11442]
  • data analysis, like the computation of standard genetic diversity indices, the estimation of allele ... instantaneous spatial expansion from DNA sequence polymorphism. Arlequin can handle several data types like...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • with complex traits. Currently, imputed single nucleotide polymorphisms (SNP) data are frequently used ... family-based studies, studies performed in human genetically isolated populations and outbred animal populations. Conclusions...