• pi-MASS

  • Referenced in 16 articles [sw17249]
  • Bayesian variable selection regression for genome-wide association studies and other large-scale problems ... Selection Regression, or BVSR, to genome-wide association studies and similar large-scale regression problems ... Currently, typical genome-wide association studies measure hundreds of thousands, or millions, of genetic variants ... regression. Characteristic features of genome-wide association studies include the following: (i) a focus primarily...
  • ranger

  • Referenced in 24 articles [sw14498]
  • scale of a genome-wide association study...
  • GCTA

  • Referenced in 16 articles [sw23135]
  • traits, SNPs identified by genome-wide association studies (GWAS) explain only a small fraction ... user-friendly software tool called genome-wide complex trait analysis (GCTA), which was developed based ... whole genome for a complex trait rather than testing the association of any particular...
  • Rassoc

  • Referenced in 11 articles [sw25402]
  • commonly used tests in case-control association studies. For illustration, Rassoc is applied ... significant SNPs reported in four genome-wide association studies...
  • MaCH

  • Referenced in 7 articles [sw17274]
  • estimate haplotypes and unobserved genotypes. Genome-wide association studies (GWAS) can identify common alleles that ... approach is already widely used to facilitate comparison of results across studies as well ... facilitates cross study analyses but also increases power of genetic association studies. We show that ... genome-wide SNP data or smaller amounts of data typical in fine-mapping studies. Furthermore...
  • SNPHarvester

  • Referenced in 5 articles [sw35289]
  • detecting epistatic interactions in genome-wide association studies. Motivation: Hundreds of thousands of single nucleotide ... polymorphisms (SNPs) are available for genome-wide association (GWA) studies nowadays. The epistatic interactions ... method to search epistatic interactions in genome-wide scale. Results: We propose a new method ... using a wide range of simulated data and a real genome-wide data, we demonstrate...
  • HAPGEN2

  • Referenced in 6 articles [sw17354]
  • designs and analysis methods in genome-wide association studies. Simulation based on resampling known haplotypes...
  • HapBlock

  • Referenced in 5 articles [sw26434]
  • Recent studies have revealed that linkage disequilibrium (LD) patterns vary across the human genome with ... polymorphism (SNPs; tag SNPs) for genome-wide association studies. We have developed a suite...
  • TATES

  • Referenced in 3 articles [sw20044]
  • multivariate genotype-phenotype analysis for genome-wide association studies. To date, the genome-wide association...
  • dmGWAS

  • Referenced in 3 articles [sw29291]
  • dmGWAS: dense module searching for genome-wide association studies in protein–protein interaction networks. MOTIVATION ... from the recent success of genome-wide association studies (GWAS) is how to detect genetic...
  • ProbABEL

  • Referenced in 6 articles [sw10861]
  • Over the last few years, genome-wide association (GWA) studies became a tool of choice ... software package for the analysis of genome-wide imputed SNP data and quantitative, binary ... association in samples with differential relationships, facilitating analysis in family-based studies, studies performed ... analyze imputed data in genome-wide context and will facilitate future identification of complex trait...
  • kerfdr

  • Referenced in 4 articles [sw35302]
  • sequences, genes expression and genome-wide association studies. Conclusion: The proposed method has the practical...
  • GEMMA

  • Referenced in 4 articles [sw23999]
  • close relatives for genome-wide association studies (GWAS): It fits a univariate linear mixed model...
  • P2BAT

  • Referenced in 2 articles [sw25497]
  • Parallel Implementation of PBAT for Genome-Wide Association Studies in R. The software tool P2BAT ... large-scale studies, including genome-wide association studies with several thousand subjects. Built ... multiple testing problem in family-based association studies, P2BAT integrates all PBAT-analysis tools ... through a user-friendly GUI. The genome-wide analysis tools are fully automated...
  • GWASpi

  • Referenced in 2 articles [sw30109]
  • GWASpi: Genome Wide Association Studies pipeline. A (Java) tool (GUI & scriptable) GWAS on the desktop ... tool to perform Genome-Wide Association Studies. Written in Java, with Apache Derby, JFreeChart...
  • RSS

  • Referenced in 2 articles [sw23316]
  • regression with summary statistics from genome-wide association studies. Bayesian methods for large-scale multiple ... approaches to the analysis of genome-wide association studies (GWAS). For example, they can estimate ... sparse models; and by incorporating external genomic data into the priors, they can increase power ... Markov chain Monte Carlo. In a wide range of simulations RSS performs similarly to analyses...
  • netgwas

  • Referenced in 3 articles [sw21512]
  • Package for Network-Based Genome-Wide Association Studies. Graphical models provide powerful tools to model...
  • GWAsimulator

  • Referenced in 4 articles [sw16748]
  • HapMap data. As genome-wide association (GWA) studies become increasingly popular and new GWA data...
  • CNVassoc

  • Referenced in 2 articles [sw19389]
  • includes tools for estimating association under a series of study designs (case-control, cohort ... Moreover, it is possible to perform epistasis studies with pairs of CNVs or imputed SNPs ... make feasible the analyses of Genome Wide Association studies (GWAs) with hundreds of thousands...
  • METASOFT

  • Referenced in 2 articles [sw33850]
  • meta-analysis software tool for genome-wide association study analysis, designed to perform a range...