
McVol
 Referenced in 2 articles
[sw20199]
 molecule or not. This method in combination with a graphtheoretical algorithm is used ... other molecular calculations. We apply this method to several proteins and demonstrate the usefulness...

MotifCut
 Referenced in 5 articles
[sw35400]
 subgraphs. Results: We present MotifCut, a graphtheoretic approach to motif finding leading ... polynomial time solution. We build a graph where the vertices represent all kmers ... represent pairwise kmer similarity. In this graph, we search for a motif ... that it compares favorably to existing popular methods. The ability of MotifCut to detect motifs...

RECFMM
 Referenced in 5 articles
[sw21760]
 scheme for parallelizing the adaptive fast multipole method (FMM) on sharedmemory computers. It achieves ... systems  CILK in particular, which provides graphtheoretic optimal scheduling in adaptation to the dynamics...

BrainNet Viewer
 Referenced in 6 articles
[sw26512]
 analytic strategies, such as graph theory. These methods reveal the intriguing topological architectures of human ... huge complexity of this methodology, toolboxes for graphbased network visualization are still lacking. Here ... user interface (GUI), we developed a graphtheoretical network visualization toolbox, called BrainNet Viewer...

SpectralNET
 Referenced in 3 articles
[sw26161]
 designed specifically with the analysis of graphtheoretic metrics in mind, a computational task ... realworld dataset. Whichever graphgeneration method is used, SpectralNET displays detailed information about each ... connected component of the graph, including graphs of degree distribution, clustering coefficient by degree ... graph structure (Laplacian eigenvectors). CONCLUSION: SpectralNET provides an easily accessible means of analyzing graphtheoretic...

HydroGen
 Referenced in 1 article
[sw26156]
 WDNs in an analysis based on graphtheoretical indices. HydroGen is used to generate ... realistic test networks on which (metaheuristic) methods for the optimisation of WDN design...

MathCheck
 Referenced in 9 articles
[sw13642]
 systems and SAT solvers. We present a method and an associated system, called MathCheck, that ... universal conjectures on any mathematical topic (e.g., graph and number theory, algebra, geometry, etc.) supported ... this paper, we leverage the graphtheoretic capabilities of an opensource CAS, called SAGE...

GraphVar
 Referenced in 1 article
[sw26482]
 measures as well as additional features. New Method: GraphVar 2.0 provides machine learning (ML) model ... functionalities, such as network construction and graphtheoretical analyses of brain connectivity with a high ... high quality export. Comparison with existing methods: Compared to other existing toolboxes, GraphVar 2.0 offers...

Matlab
 Referenced in 11885 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

nauty
 Referenced in 549 articles
[sw00611]
 graphtheoretic program NAUTY: nauty is a program...

SageMath
 Referenced in 1582 articles
[sw00825]
 Sage (SageMath) is free, opensource math software...

SINGULAR
 Referenced in 1357 articles
[sw00866]
 SINGULAR is a Computer Algebra system (CAS) for...

XPPAUT
 Referenced in 397 articles
[sw05543]
 XPPAUT is software for the analysis and simulation...

ANSYSCFX
 Referenced in 95 articles
[sw06391]
 ANSYS CFX software is a highperformance, general...

GRAFFITI
 Referenced in 162 articles
[sw07495]
 On conjectures of Graffiti The above mentioned article...

BUGS
 Referenced in 350 articles
[sw07885]
 The BUGS (Bayesian inference Using Gibbs Sampling) project...

symrcm
 Referenced in 376 articles
[sw08566]
 symrcm: Sparse reverse CuthillMcKee ordering. r = symrcm...

Ginsim
 Referenced in 28 articles
[sw09090]
 GINsim: A software suite for the qualitative modelling...

Algorithm 447
 Referenced in 136 articles
[sw12877]
 Algorithm 447: effcient algorithms for graph manipulation. Efficient...