
ergm.graphlets
 Referenced in 4 articles
[sw20899]
 Package for ERG Modeling Based on Graphlet Statistics. Exponentialfamily random graph models (ERGMs ... addition of statistics based on graphlets. Graphlets are small, connected, and nonisomorphic induced subgraphs ... called ergm.graphlets that enables the use of graphlet properties of a network within the ergm ... node graphlet into ERGMs. The new model terms of ergm.graphlets package enable both ERG modelling...

RAGE
 Referenced in 3 articles
[sw24031]
 RAGE  A rapid graphlet enumerator for large networks. Counting network graphlets (and motifs) was shown ... graphs, counting the number of graphlets becomes prohibitive for graphlets of size 4 and above ... Devising efficient graphlet counting algorithms thus becomes an important goal. In this paper, we present ... efficient counting algorithms for 4node graphlets. We show how to efficiently count the total...

graph2vec
 Referenced in 5 articles
[sw32340]
 kernels use handcrafted features (e.g., shortest paths, graphlets, etc.) and hence are hampered by problems...

GRAlign
 Referenced in 2 articles
[sw34352]
 Aligning Protein Structures with GRAlign (GRaphletbased Aligner). GRAlign is a fast heuristic ... cost for matching two residues is their graphlet degree similarity...

graphkernels
 Referenced in 2 articles
[sw27018]
 between vertex and/or edge label histograms, (2) graphlet kernels, (3) random walk kernels (popular baselines...

GREAT
 Referenced in 1 article
[sw18878]
 GREAT: GRaphlet Edgebased network AlignmenT. Network alignment aims to find regions of topological ... that our proposed method, which we call GRaphlet Edge AlignmenT (GREAT), improves upon state...

LGRAAL
 Referenced in 1 article
[sw34161]
 GRAAL: Lagrangian graphletbased network aligner. Results: We introduce a novel global network alignment tool ... Lagrangian GRAphletbased ALigner (LGRAAL), which directly optimizes both the protein and the interaction...

SANA
 Referenced in 1 article
[sw15882]
 similarity, as well as topological measures like graphlet similarity and edge coverage (possibly weighted). Algorithms...

orca
 Referenced in 1 article
[sw24030]
 package orca: Computation of Graphlet Orbit Counts in Sparse Graphs. Implements orbit counting using...

AGD
 Referenced in 12 articles
[sw00022]
 AGDLibrary: A Library of Algorithms for Graph...

Matlab
 Referenced in 12074 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

nauty
 Referenced in 558 articles
[sw00611]
 graphtheoretic program NAUTY: nauty is a program...

R
 Referenced in 8359 articles
[sw00771]
 R is a language and environment for statistical...

Pajek
 Referenced in 133 articles
[sw03707]
 Pajek  analysis and visualization of large networks. Pajek...

CRAN
 Referenced in 456 articles
[sw04351]
 R is ‘GNU S’, a freely available language...

Valgrind
 Referenced in 56 articles
[sw04420]
 Valgrind is an instrumentation framework for building dynamic...

ergm
 Referenced in 48 articles
[sw06777]
 R package ergm: Fit, Simulate and Diagnose Exponential...

statnet
 Referenced in 55 articles
[sw07328]
 R package statnet: Software tools for the Statistical...

glmnet
 Referenced in 461 articles
[sw08159]
 R package glmnet: Lasso and elasticnet regularized...