• ergm.graphlets

  • Referenced in 4 articles [sw20899]
  • Package for ERG Modeling Based on Graphlet Statistics. Exponential-family random graph models (ERGMs ... addition of statistics based on graphlets. Graphlets are small, connected, and non-isomorphic induced subgraphs ... called ergm.graphlets that enables the use of graphlet properties of a network within the ergm ... node graphlet into ERGMs. The new model terms of ergm.graphlets package enable both ERG modelling...
  • RAGE

  • Referenced in 3 articles [sw24031]
  • RAGE - A rapid graphlet enumerator for large networks. Counting network graphlets (and motifs) was shown ... graphs, counting the number of graphlets becomes prohibitive for graphlets of size 4 and above ... Devising efficient graphlet counting algorithms thus becomes an important goal. In this paper, we present ... efficient counting algorithms for 4-node graphlets. We show how to efficiently count the total...
  • graph2vec

  • Referenced in 5 articles [sw32340]
  • kernels use handcrafted features (e.g., shortest paths, graphlets, etc.) and hence are hampered by problems...
  • GR-Align

  • Referenced in 2 articles [sw34352]
  • Aligning Protein Structures with GR-Align (GRaphlet-based Aligner). GR-Align is a fast heuristic ... cost for matching two residues is their graphlet degree similarity...
  • graphkernels

  • Referenced in 2 articles [sw27018]
  • between vertex and/or edge label histograms, (2) graphlet kernels, (3) random walk kernels (popular baselines...
  • GREAT

  • Referenced in 1 article [sw18878]
  • GREAT: GRaphlet Edge-based network AlignmenT. Network alignment aims to find regions of topological ... that our proposed method, which we call GRaphlet Edge AlignmenT (GREAT), improves upon state...
  • L-GRAAL

  • Referenced in 1 article [sw34161]
  • GRAAL: Lagrangian graphlet-based network aligner. Results: We introduce a novel global network alignment tool ... Lagrangian GRAphlet-based ALigner (L-GRAAL), which directly optimizes both the protein and the interaction...
  • SANA

  • Referenced in 1 article [sw15882]
  • similarity, as well as topological measures like graphlet similarity and edge coverage (possibly weighted). Algorithms...
  • orca

  • Referenced in 1 article [sw24030]
  • package orca: Computation of Graphlet Orbit Counts in Sparse Graphs. Implements orbit counting using...
  • AGD

  • Referenced in 12 articles [sw00022]
  • AGD-Library: A Library of Algorithms for Graph...
  • Matlab

  • Referenced in 12074 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • nauty

  • Referenced in 558 articles [sw00611]
  • graph-theoretic program NAUTY: nauty is a program...
  • R

  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...
  • Pajek

  • Referenced in 133 articles [sw03707]
  • Pajek -- analysis and visualization of large networks. Pajek...
  • CRAN

  • Referenced in 456 articles [sw04351]
  • R is ‘GNU S’, a freely available language...
  • Valgrind

  • Referenced in 56 articles [sw04420]
  • Valgrind is an instrumentation framework for building dynamic...
  • ergm

  • Referenced in 48 articles [sw06777]
  • R package ergm: Fit, Simulate and Diagnose Exponential...
  • statnet

  • Referenced in 55 articles [sw07328]
  • R package statnet: Software tools for the Statistical...
  • glmnet

  • Referenced in 461 articles [sw08159]
  • R package glmnet: Lasso and elastic-net regularized...