• SHOGUN

  • Referenced in 97 articles [sw03517]
  • models such as support vector machines, hidden Markov models, multiple kernel learning, linear discriminant analysis...
  • msm

  • Referenced in 43 articles [sw08096]
  • package msm: Multi-state Markov and hidden Markov models in continuous time. Functions for fitting ... general continuous-time Markov and hidden Markov multi-state models to longitudinal data. A variety ... transition rates and the hidden Markov output process can be modelled in terms of covariates...
  • PRISM

  • Referenced in 33 articles [sw23359]
  • most popular probabilistic modeling formalisms, the hidden Markov model and Bayesian networks, are described...
  • Rfam

  • Referenced in 32 articles [sw04637]
  • sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down ... more complicated relative of the profile hidden Markov models (HMMs) used by Pfam...
  • LSTM

  • Referenced in 24 articles [sw03373]
  • than other adaptive approaches such as Hidden Markov Models (no continuous internal states), feedforward networks...
  • HTK

  • Referenced in 16 articles [sw07937]
  • Hidden Markov Model Toolkit (HTK) is a portable toolkit for building and manipulating hidden Markov...
  • PennCNV

  • Referenced in 16 articles [sw19390]
  • PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection ... kilobases. Here we present PennCNV, a hidden Markov model (HMM) based approach, for kilobase-resolution...
  • WAFO

  • Referenced in 22 articles [sw07370]
  • loads; Theoretical density of rainflow cycles Sea modelling: Simulation of linear and non-linear Gaussian ... Extreme value analysis; Kernel density estimation, Hidden markov models...
  • MALLET

  • Referenced in 22 articles [sw10602]
  • natural language processing, document classification, clustering, topic modeling, information extraction, and other machine learning applications ... entity extraction from text. Algorithms include Hidden Markov Models, Maximum Entropy Markov Models, and Conditional...
  • moveHMM

  • Referenced in 12 articles [sw16166]
  • using Hidden Markov Models. Provides tools for animal movement modelling using hidden Markov models. These ... include processing of tracking data, fitting hidden Markov models to movement data, visualization of data...
  • hmm

  • Referenced in 14 articles [sw05422]
  • hidden Markov model (HMM) is one in which you observe a sequence of emissions ... generate the emissions. Analyses of hidden Markov models seek to recover the sequence of states...
  • depmixS4

  • Referenced in 12 articles [sw08234]
  • package depmixS4: Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions ... latent (hidden) Markov models on mixed categorical and continuous (time series) data, otherwise known...
  • Label.switching

  • Referenced in 17 articles [sw14745]
  • mixture models (and more general hidden Markov models) suffers from the label switching phenomenon, making...
  • BioHMM

  • Referenced in 13 articles [sw10920]
  • BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. Summary: We have developed ... copy number. By utilizing a heterogeneous hidden Markov model, BioHMM incorporates relevant biological factors...
  • Statistics Toolbox

  • Referenced in 18 articles [sw10157]
  • identify key variables that impact your model with sequential feature selection, transform your data with ... nearest neighbor search, Gaussian mixtures, and hidden Markov models...
  • PITA

  • Referenced in 18 articles [sw06950]
  • form of programs needed to model problems, and on the scale of the problems ... with PRISM for complex queries to Hidden Markov Model examples, and sometimes much faster...
  • HMMER

  • Referenced in 17 articles [sw10514]
  • feasible to make efficient profile hidden Markov model (profile HMM) searches...
  • HiddenMarkov

  • Referenced in 11 articles [sw08010]
  • package HiddenMarkov: Hidden Markov Models. Contains functions for the analysis of Discrete Time Hidden Markov...
  • R/qtl

  • Referenced in 13 articles [sw20451]
  • accessible and allow users to focus on modeling rather than computing. A key component ... methods for QTL mapping is the hidden Markov model (HMM) technology for dealing with missing...
  • TileMap

  • Referenced in 13 articles [sw35530]
  • interest or not. Hierarchical empirical Bayes model shrinks variance estimates and increases sensitivity ... moving average method (MA) or a hidden Markov model (HMM). Unbalanced mixture subtraction is proposed...