• DistAl

  • Referenced in 98 articles [sw01746]
  • distance is introduced. DistAl constructs a single hidden layer of hyperspherical threshold neurons. Each neuron ... same class. The weights and thresholds of the hidden neurons are determined directly by comparing...
  • Mixnet

  • Referenced in 9 articles [sw22900]
  • real networks are spread into hidden classes (or colors) which show specific connectivity patterns...
  • SHOGUN

  • Referenced in 97 articles [sw03517]
  • learning models such as support vector machines, hidden Markov models, multiple kernel learning, linear discriminant ... able to deal with several different data classes. We have used this toolbox in several...
  • MIForests

  • Referenced in 5 articles [sw22587]
  • trees are fast, inherently parallel and multi-class and are thus increasingly popular in computer ... trees for MIL, we define the hidden class labels inside target bags as random variables...
  • Rfam

  • Referenced in 32 articles [sw04637]
  • Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory ... slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam...
  • GPCR-CA

  • Referenced in 35 articles [sw25949]
  • which functional family class does it belong to? It is important to address these questions ... been utilized to reveal the pattern features hidden in piles of long and complicated protein ... type among the following six functional classes: (a) rhodopsin-like, (b) secretin-like, (c) metabotrophic/glutamate/pheromone...
  • GenRGenS

  • Referenced in 7 articles [sw09070]
  • several classes of models useful for sequence analysis, such as Markov chains, hidden Markov models...
  • corHMM

  • Referenced in 0 articles [sw15367]
  • Evolution. Fits a hidden rates model that allows different transition rate classes on different portions ... phylogeny by treating rate classes as hidden states in a Markov process and various other...
  • SmoothSketch

  • Referenced in 4 articles [sw09069]
  • hidden contours containing T-junctions to contours containing cusps as well, • characterizing a class...
  • E-Surge

  • Referenced in 11 articles [sw11780]
  • therefore cover a range of situations like hidden capture heterogeneity and sex determination from behaviour ... encompass this new class of capture–recapture models. It also improves on m-surge...
  • CORA

  • Referenced in 7 articles [sw25659]
  • reachability algorithms of various dynamic system classes. The software is designed such that set representations ... methods without concerning themselves with detailed information hidden inside the object. Since the toolbox...
  • FORESST

  • Referenced in 3 articles [sw26866]
  • acid sequence based on a combination of hidden Markov models (HMMs) and secondary structure prediction ... proteins in the Mainly-Alpha structural class. Here, this methodology is extended to Mainly-Beta...
  • Isomap

  • Referenced in 11 articles [sw31686]
  • dimensionality reduction: finding meaningful low-dimensional structures hidden in their high-dimensional observations. The human ... globally optimal solution, and, for an important class of data manifolds, is guaranteed to converge...
  • OOZE

  • Referenced in 3 articles [sw09494]
  • dynamic binding are supported. Data types, objects, classes and modules are clearly distinguished from ... relatively simple semantics based on order sorted, hidden sorted algebra...
  • latfield2

  • Referenced in 3 articles [sw30672]
  • Message Passing Interface (MPI) standard, and hidden in the basic objects of grid-based simulations ... parallel fast Fourier transform, and I/O server class permitting computation to continue during the writing...
  • seqHMM

  • Referenced in 2 articles [sw16137]
  • fitting hidden (latent) Markov models and mixture hidden Markov models for social sequence data ... Markov models, mixture Markov models, and latent class models. The package supports models ... easy plotting of multichannel sequence data and hidden Markov models. Models are estimated using maximum...
  • GT2K

  • Referenced in 1 article [sw12753]
  • recognition, however, can be a cumbersome task. Hidden Markov models (HMMs), a pattern recognition technique ... recognition, can be used for recognizing certain classes of gestures. Existing HMM toolkits for speech...
  • MSMBuilder

  • Referenced in 2 articles [sw23802]
  • construct Markov state models (MSMs), a class of models that has gained favor among computational ... understanding time-series data such as hidden Markov models and time-structure based independent component...
  • LISA

  • Referenced in 1 article [sw28388]
  • automatic) alignment, multiple comparisons, potential artifacts, and hidden noises. This paper introduces our MATLAB package ... analysis tool for comparing a general class of images from either different times, sessions...
  • Phylen

  • Referenced in 1 article [sw28952]
  • automatic phylogenetic reconstruction given a set of Hidden Markov Models (HMMs). Genomes are screened against ... performed and returned as an object of class ”phylo” so it can be further analysed...