• FALCON

  • Referenced in 1 article [sw26930]
  • site relationships) and species interactions (plant-pollinator and host-parasite networks). Multiple methods have been...
  • Mathematica

  • Referenced in 5883 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • R

  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 81 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...
  • Bioconductor

  • Referenced in 298 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • deSolve

  • Referenced in 50 articles [sw04499]
  • R package deSolve: General solvers for initial value...
  • gplots

  • Referenced in 6 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...
  • ape

  • Referenced in 55 articles [sw04569]
  • R package ape: Analyses of Phylogenetics and Evolution...
  • PLINK

  • Referenced in 61 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • gcrma

  • Referenced in 95 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • CL_MATCONTL

  • Referenced in 10 articles [sw06523]
  • MATLAB continuation software package CL_MATCONTL The study...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • igraph

  • Referenced in 150 articles [sw07066]
  • The igraph software package for complex network research...
  • WGCNA

  • Referenced in 17 articles [sw07123]
  • R package WGCNA: Weighted Correlation Network Analysis. Functions...
  • BoolNet

  • Referenced in 14 articles [sw07365]
  • BoolNet: Generation, reconstruction, simulation and analysis of synchronous...
  • Cytoscape

  • Referenced in 69 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...
  • diffEq

  • Referenced in 35 articles [sw11101]
  • diffEq: Functions from the book Solving Differential Equations...
  • COPASI

  • Referenced in 62 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...
  • Dynagraph

  • Referenced in 13 articles [sw13656]
  • The Dynagraph libraries are written in platform-neutral...