• Trilinos

  • Referenced in 356 articles [sw04028]
  • self-contained, independent piece of software with its own set of requirements, its own development ... other Trilinos packages. It also offers a set of tools that can assist package developers ... across multiple platforms, generating documentation and regression testing across a set of target platforms...
  • GOASVM

  • Referenced in 6 articles [sw22445]
  • accuracy of 72.2% on a new independent test set comprising novel proteins that were added...
  • AUTO-MUTE

  • Referenced in 9 articles [sw16878]
  • native structures. Trained models classify independent mutant test sets with accuracies ranging from...
  • MIQR

  • Referenced in 8 articles [sw07242]
  • requirement of independent sets of columns. Numerical tests are proposed which compare this scheme with...
  • SPINE-D

  • Referenced in 2 articles [sw16912]
  • prediction afterwards. SPINE-D was tested on various sets composed of different combinations of Disprot ... long disordered regions in the test set. With greater than 85% overall specificity for detecting ... test dataset with 56.5% ordered residues but more challenging (at 65% sensitivity) in a test ... disorder contents of proteins for an independent test set with 329 proteins. In particular, SPINE...
  • SPIDER2

  • Referenced in 2 articles [sw25872]
  • several structural properties simultaneously. For an independent test set of 1199 proteins SPIDER2 achieves...
  • laGP

  • Referenced in 20 articles [sw14043]
  • finding small local designs for prediction (independently) at particular inputs. OpenMP and SNOW parallelization ... over a vast out-of-sample testing set; GPU acceleration is also supported...
  • HHG

  • Referenced in 7 articles [sw16725]
  • set of powerful statistical tests of multivariate k-sample homogeneity and independence. For the univariate...
  • ModelMap

  • Referenced in 1 article [sw15774]
  • validates the models with an independent test set, cross validation, or in the case...
  • ParaSCIP

  • Referenced in 29 articles [sw06292]
  • tree) locally. This makes the parallelization development independent of the SCIP development. Thus, ParaSCIP directly ... unsolved instances from MIPLIB2003, a standard test set library for MIP solvers. For these computations...
  • MemLoci

  • Referenced in 2 articles [sw24068]
  • internal and organelle membrane. When tested on an independent set, MemLoci outperforms existing methods, reaching...
  • CARAT

  • Referenced in 6 articles [sw35399]
  • specific copy number estimations using CARAT are independently evaluated for a subset of SNPs using ... chromosomes as well as a test set of normal individuals. Results from the algorithm show ... high degree of agreement with results from independent verification methods. Conclusion: Overall, CARAT automatically detects...
  • SecretP

  • Referenced in 14 articles [sw22470]
  • subtilis are collected to construct the test sets of Gram-negative and Gram-positive bacteria ... existing methods. When performed on two public independent data sets for predicting NCSPs, it also...
  • ROAST

  • Referenced in 7 articles [sw17318]
  • genes as a unit. Gene set tests are valuable for increasing statistical power, organizing ... rely on permutation of probes unrealistically assume independence of genes, while those that rely ... present ROAST, a statistically rigorous gene set test that allows for gene-wise correlation while...
  • BiqCrunch

  • Referenced in 6 articles [sw23686]
  • based bounding procedure. It has been successfully tested on a variety of well-known combinatorial ... Cluster, and Max-Independent-Set. The code is publicly available online; a web interface...
  • MATS

  • Referenced in 5 articles [sw10542]
  • commercial and freeware softwares rather selectively and independently. The Measures of Analysis of Time Series ... designed to handle an arbitrary large set of scalar time series and compute a large ... visualization of the results support different settings of time series analysis, such as the detection ... data records, resampling (surrogate or bootstrap) tests for independence and linearity with various test statistics...
  • Rapsodia

  • Referenced in 12 articles [sw12522]
  • modest order and number of independents. Initial experiments using univariate Taylor polynomials with interpolation ... approach, implementation, and present test results on a select set of applications. Further details...
  • PREvaIL

  • Referenced in 10 articles [sw25073]
  • method was developed by leveraging a comprehensive set of informative features extracted from multiple levels ... fold cross-validation and independent tests, as well as side-by-side performance comparisons with...
  • CODA

  • Referenced in 1 article [sw17374]
  • nonhomologous test set. CODA clusters the predictions from the two independent programs and makes ... rule-based filters. CODA was parameterized and tested on two unrelated separate sets of structures...
  • dCovTS

  • Referenced in 1 article [sw27900]
  • Test statistics for testing pairwise independence are also implemented. Some data sets are also included...