
IdCoefs
 Referenced in 2 articles
[sw34166]
 computation of identity coefficients and generalized kinship coefficients. Summary: Computing the probability of identity ... algorithm for efficiently computing all generalized kinship coefficients for n genes. The graphical description transforms ... structure referred to as the kinship graph. Availability: The algorithm is implemented...

PedKin
 Referenced in 1 article
[sw34169]
 Efficient computation of the kinship coefficients. Results: This paper gives the fastest known algorithms ... computing the kinship coefficient of a set of individuals with a known pedigree, especially ... compute the appropriate inbreedingadjusted kinship coefficients, which has not been addressed in literature ... pedigree on which to estimate the kinship coefficients of n‾√ n individuals of interest from...

ribd
 Referenced in 1 article
[sw34165]
 algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal ... lesserknown coefficients, including generalised kinship coefficients (Karigl (1981) ; Weeks and Lange...

KinInbcoef
 Referenced in 1 article
[sw10665]
 KinInbcoef: Calculation of Kinship and Inbreeding Coefficients Based on Pedigree Information. KinInbcoef ... program that computes inbreeding and kinship coefficients for general pedigrees using the algorithm proposed...

SPAGEDi
 Referenced in 2 articles
[sw07534]
 treated to estimate pairwise kinship or relationship coefficients between individuals (Hardy 2003 ME.pdf). The statistics ... individual level, pairwise kinship, relatedness and fraternity coefficients (with different estimators for each) as well ... Rousset’s distance between individuals and a kinship analogue based on allele size. Jackknife over...

optiSel
 Referenced in 0 articles
[sw19437]
 pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition ... computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent...

R
 Referenced in 8359 articles
[sw00771]
 R is a language and environment for statistical...

Pajek
 Referenced in 133 articles
[sw03707]
 Pajek  analysis and visualization of large networks. Pajek...

pls
 Referenced in 29 articles
[sw04365]
 R package pls: Partial Least Squares and Principal...

PLINK
 Referenced in 61 articles
[sw04581]
 PLINK is a free, opensource whole genome...

glmnet
 Referenced in 461 articles
[sw08159]
 R package glmnet: Lasso and elasticnet regularized...

bnlearn
 Referenced in 56 articles
[sw08265]
 R package bnlearn: Bayesian network structure learning, parameter...

spBayes
 Referenced in 325 articles
[sw10160]
 spBayes: An R Package for Univariate and Multivariate...

CFC
 Referenced in 1 article
[sw10666]
 CFC: a tool for monitoring genetic diversity. Monitoring...

STRUCTURE
 Referenced in 70 articles
[sw13672]
 The program structure is a free software package...

WinGULF
 Referenced in 14 articles
[sw19224]
 WinGULF: General Userfriendly Linear and linearFractional...

GCTA
 Referenced in 16 articles
[sw23135]
 GCTA: a tool for genomewide complex trait...

kinship2
 Referenced in 6 articles
[sw24917]
 R package kinship2: Pedigree Functions. Routines to handle...

clusfind
 Referenced in 427 articles
[sw27805]
 clusfind: A set of six standalone Fortran...

Pedig
 Referenced in 1 article
[sw34167]
 Pedig: a fortran package for pedigree analysis suited...