• PhyloNetwork

  • Referenced in 27 articles [sw28216]
  • between genes, hybridization between lineages, and lateral gene transfer. While most phylogenetics tools implement...
  • SigHunt

  • Referenced in 1 article [sw30007]
  • through horizontal gene transfer (also called lateral gene transfer), often with functions novel...
  • Phylonets

  • Referenced in 1 article [sw18581]
  • reticulate events like recombinations, hybridizations, or lateral gene transfers. Tree-child reticulate networks (TC networks...
  • MATCONT

  • Referenced in 363 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...
  • Matlab

  • Referenced in 12074 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...
  • AUTO

  • Referenced in 877 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...
  • UCI-ml

  • Referenced in 3041 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • Gromacs

  • Referenced in 115 articles [sw04128]
  • GROMACS is a versatile package to perform molecular...
  • ape

  • Referenced in 55 articles [sw04569]
  • R package ape: Analyses of Phylogenetics and Evolution...
  • Rfam

  • Referenced in 33 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • BioJava

  • Referenced in 13 articles [sw05334]
  • BioJava aims to provide a comprehensive set of...
  • XPPAUT

  • Referenced in 406 articles [sw05543]
  • XPPAUT is software for the analysis and simulation...
  • ALLPATHS

  • Referenced in 15 articles [sw06112]
  • ALLPATHS-LG is a whole-genome shotgun assembler...
  • Biopython

  • Referenced in 16 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • PHENIX

  • Referenced in 4 articles [sw07392]
  • PHENIX: a comprehensive Python-based system for macromolecular...
  • PHYLIP

  • Referenced in 97 articles [sw07694]
  • PHYLIP is a free package of programs for...
  • MrBayes

  • Referenced in 49 articles [sw07715]
  • MrBayes: Bayesian Inference of Phylogeny. MrBayes is a...
  • RAxML

  • Referenced in 34 articles [sw07716]
  • Parallel inference of a 10.000-taxon phylogeny with...