• LncmiRSRN

  • Referenced in 1 article [sw34139]
  • LncmiRSRN: identification and analysis of long non-coding RNA related miRNA sponge regulatory network...
  • LncFinder

  • Referenced in 0 articles [sw18819]
  • package LncFinder. LncFinder: Long Non-Coding RNA Identification Based on Features of Sequence, EIIP ... predicting sequences are mRNAs or long non-coding RNAs. Default models are trained on human...
  • LncPath

  • Referenced in 0 articles [sw15466]
  • regulated by the interested lncRNA(long non-coding RNA) sets based on a lncRNA-mRNA...
  • MAP-RSeq

  • Referenced in 1 article [sw34369]
  • single nucleotide variants (SNVs). By efficiently analyzing RNA-Seq data, we can query and obtain ... splice sites, long non-coding and circular RNAs, SNVs, etc. Most RNA-Seq bioinformatics tools...
  • PhyloCSF

  • Referenced in 1 article [sw11719]
  • long non-coding RNAs, often initially recognized by their lack of protein coding potential rather ... than conserved RNA secondary structures. Availability and Implementation: The Objective Caml source code and executables...
  • Segmentor3IsBack

  • Referenced in 5 articles [sw21077]
  • important issue in biology which has long been addressed with gene prediction methods and manual ... approach to the domain: the segmentation of RNA-Seq data to determine gene boundaries. Because ... segments, which can be associated to coding or non-coding regions of the genome, using...
  • R

  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 81 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...
  • Bioconductor

  • Referenced in 298 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • gplots

  • Referenced in 6 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...
  • PLINK

  • Referenced in 61 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • Rfam

  • Referenced in 33 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • Rnamotif

  • Referenced in 10 articles [sw04638]
  • The rnamotif program [1] searches a database for...
  • gcrma

  • Referenced in 95 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • igraph

  • Referenced in 150 articles [sw07066]
  • The igraph software package for complex network research...
  • WGCNA

  • Referenced in 17 articles [sw07123]
  • R package WGCNA: Weighted Correlation Network Analysis. Functions...
  • BoolNet

  • Referenced in 14 articles [sw07365]
  • BoolNet: Generation, reconstruction, simulation and analysis of synchronous...
  • MAFFT

  • Referenced in 41 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...
  • Cytoscape

  • Referenced in 69 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...