• Memtype-2L

  • Referenced in 39 articles [sw16472]
  • server for predicting membrane proteins and their types by incorporating evolution information through pse-PSSM ... identify whether it is a membrane protein or not? If it is, which membrane protein ... engine is to identify a query protein as membrane ... membrane; if it is a membrane protein, the process will be automatically continued with...
  • MemHyb

  • Referenced in 15 articles [sw25194]
  • MemHyb: predicting membrane protein types by hybridizing SAAC and PSSM. About 50% of available drugs ... targeted against membrane proteins. Knowledge of membrane protein’s structure and function has great importance ... help in identifying the new membrane protein types based on their primary sequence. In this ... tackle the interesting problem of classifying membrane protein types using their sequence information. We consider...
  • DL_POLY

  • Referenced in 28 articles [sw09140]
  • ionic solids; molecular crystals; polymers; glasses; membranes; proteins; solid and liquid interfaces; catalysis; liquid crystals...
  • Unb-DPC

  • Referenced in 7 articles [sw25079]
  • Identify mycobacterial membrane protein types by incorporating un-biased dipeptide composition into Chou’s general ... accurate computational method for predicating mycobacterial membrane protein. Mycobacterium is a pathogenic bacterium which ... composition cannot suitably express the mycobacterium membrane protein and their types due to biasness among ... biasness among the different mycobacterium membrane protein and their types. Secondly, the method is fast...
  • iLoc-Hum

  • Referenced in 36 articles [sw22433]
  • benchmark dataset of human proteins that covers the following 14 location sites: centrosome, cytoplasm, cytoskeleton ... mitochondrion, nucleus, peroxisome, plasma membrane, and synapse, where some proteins belong to two, three...
  • SOSUI

  • Referenced in 8 articles [sw35979]
  • secondary structure prediction system for membrane proteins. The system SOSUI for the discrimination of membrane...
  • PDB-REPRDB

  • Referenced in 5 articles [sw26865]
  • residues. The number of entries including membrane protein structures in the PDB has increased rapidly ... with determination of numbers of membrane protein structures because of improved X-ray crystallography ... structure studies must address globular and membrane proteins separately, this new elimination factor, which excludes ... membrane protein chains, is introduced in the PDB-REPRDB system. Moreover, the PDB-REPRDB system...
  • PRED-TMBB

  • Referenced in 5 articles [sw11338]
  • topology of beta-barrel outer membrane proteins. In this work we developed a method based ... gram-negative bacteria outer membrane proteins, and of discriminating such proteins from water-soluble ones ... redundant database consisting of 16 outer membrane proteins (OMP’s) with their structures known ... with a high accuracy the outer membrane proteins from water soluble in large datasets, making...
  • GPCRpred

  • Referenced in 7 articles [sw22471]
  • largest superfamilies of membrane proteins and are important targets for drug design. In this study...
  • BOMP

  • Referenced in 4 articles [sw11337]
  • predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. This ... integral β-barrel outer membrane protein. The program, called the β-barrel Outer Membrane protein...
  • iLoc-Animal

  • Referenced in 20 articles [sw22427]
  • animal proteins classified into the following 20 location sites: (1) acrosome, (2) cell membrane ... peroxisome, (18) plasma membrane, (19) spindle, and (20) synapse, where many proteins belong...
  • Apbsmem

  • Referenced in 4 articles [sw22298]
  • graphical interface for electrostatic calculations at the membrane. Electrostatic forces are one of the primary ... placement relative to the protein, and set the membrane potential. The software Jmol is embedded ... visualize the protein inserted in the membrane before the calculation and the electrostatic potential after ... computational researchers alike. Three examples of membrane protein electrostatic calculations are carried out to illustrate...
  • iLoc-Euk

  • Referenced in 37 articles [sw22434]
  • eukaryotic proteins classified into the following 22 location sites: (1) acrosome, (2) cell membrane ... synapse, and (22) vacuole, where none of proteins included has ≥25% pairwise sequence identity...
  • Plant-mPLoc

  • Referenced in 27 articles [sw22435]
  • identify plant proteins among the following 12 location sites: (1) cell membrane, (2) cell wall ... with the existing methods for predicting plant protein subcellular localization, the new predictor is much...
  • iLoc-Virus

  • Referenced in 31 articles [sw22417]
  • viral proteins among the following six locations: (1) viral capsid, (2) host cell membrane ... accurately predict the location sites of viral proteins in a host cell, but also have...
  • iLoc-Gpos

  • Referenced in 18 articles [sw22418]
  • positive bacterial proteins classified into the following four subcellular locations: (1) cell membrane, (2) cell...
  • PSOFuzzySVM-TMH

  • Referenced in 3 articles [sw27664]
  • incorporated fuzzy support vector machine. Membrane protein is a central component of the cell that ... manages intra and extracellular processes. Membrane proteins execute a diversity of functions that are vital...
  • TMBETA-NET

  • Referenced in 2 articles [sw11339]
  • membrane spanning β-strands in outer membrane proteins. We have developed a web-server, TMBETA ... discriminating outer membrane proteins and predicting their membrane spanning β-strand segments. The amino acid ... compositions of globular and outer membrane proteins have been systematically analyzed and a statistical method ... been proposed for discriminating outer membrane proteins. The prediction of membrane spanning segments is mainly...
  • MemLoci

  • Referenced in 2 articles [sw24068]
  • MemLoci: predicting subcellular localization of membrane proteins in eukaryotes. MOTIVATION: Subcellular localization ... functional annotation of both globular and membrane proteins. In the absence of experimental data, protein ... known. This is so particularly for membrane proteins. Furthermore, most of the available predictors ... globular proteins and poorly perform on membrane proteins. RESULTS: Here we develop MemLoci...
  • iMembrane

  • Referenced in 2 articles [sw17379]
  • homology-based method, which predicts a membrane protein’s position within a lipid bilayer ... grained molecular dynamics simulations onto any membrane protein structure or sequence provided by the user ... allowing the rapid prediction of a membrane protein’s lipid bilayer insertion. Bilayer insertion data ... accurate structural modelling of membrane proteins or the design of drugs that target them. Availability...