
13cflux2
 Referenced in 2 articles
[sw11825]
 mathematical models. 13Cbased metabolic flux analysis emerged as the stateoftheart technique...

Isodesign
 Referenced in 1 article
[sw16410]
 optimizing the design of 13metabolic flux analysis experiments. The growing demand for 13Cmetabolic ... flux analysis (13CMFA) in the field of metabolic engineering and systems biology is driving ... step in improving both the number of fluxes that can be calculated from...

FFCA
 Referenced in 2 articles
[sw17351]
 feasibilitybased method for flux coupling analysis of metabolic networks. Background: Flux coupling analysis ... finding dependencies between fluxes of a metabolic network at steadystate. FCA classifies reactions into ... algorithm, FFCA (Feasibilitybased Flux Coupling Analysis), which is based on checking the feasibility...

F2c2
 Referenced in 2 articles
[sw17352]
 scale metabolic networks. Background: Flux coupling analysis (FCA) has become a useful tool ... based analysis of genomescale metabolic networks. FCA allows detecting dependencies between reaction fluxes...

SCAMP
 Referenced in 11 articles
[sw02112]
 control analysis program. SCAMP is a generalpurpose simulator of metabolic and chemical networks ... support an ANSI C compiler. SCAMP accepts metabolic models described in a biochemical language ... experienced users rapidly to build and simulate metabolic systems. The language is sufficiently flexible ... coefficients and elasticities of metabolic control analysis; userdefined forcing functions at the model boundaries...

tFCA
 Referenced in 1 article
[sw17350]
 analysis. Flux coupling analysis (FCA) has become a useful tool for aiding metabolic reconstructions ... property related to the supports of metabolic fluxes. In this paper, we further extend ... develop an efficient algorithm for generic flux coupling analysis that works with any kind ... thermodynamic flux coupling analysis (tFCA), which allows studying steadystate metabolic models with loop...

sybil
 Referenced in 0 articles
[sw15804]
 constraint based analyses of metabolic networks (e.g. fluxbalance analysis (FBA), minimization of metabolic adjustment...

MetaModel
 Referenced in 4 articles
[sw09011]
 program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles ... calculating steadystate fluxes and metabolite concentrations of metabolic systems ... empirically the classic summation relationships of metabolic control analysis but also a research tool...

MetExplore
 Referenced in 4 articles
[sw12274]
 database (freely available on demand). Information about metabolic networks mainly come from BioCyclike databases ... Several genomescale models designed for Flux Balance Analysis have also been imported into MetExplore...

sybilcycleFreeFlux
 Referenced in 0 articles
[sw15790]
 space. Flux balance analysis is a technique to find fluxes in metabolic models at steady ... Palsson, B.O. What is flux balance analysis? Nat. Biotech...

BioMet
 Referenced in 1 article
[sw20501]
 Toolbox, a webbased resource for stoichiometric analysis and for integration of transcriptome and interactome ... thereby exploiting the capabilities of genomescale metabolic models. The BioMet Toolbox provides an effective ... substrate uptake rates and metabolic production rates by detecting relevant fluxes, simulate single and double...

ANSYS
 Referenced in 404 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

LEDA
 Referenced in 193 articles
[sw00509]
 In the core computer science areas  data structures...

Maple
 Referenced in 3967 articles
[sw00545]
 The result of over 30 years of cutting...

Mathematica
 Referenced in 4133 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 7110 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

PHCpack
 Referenced in 146 articles
[sw00705]
 Algorithm 795: PHCpack: A generalpurpose solver for...

R
 Referenced in 3313 articles
[sw00771]
 R is a language and environment for statistical...

REDUCE
 Referenced in 663 articles
[sw00789]
 REDUCE is an interactive system for general algebraic...

SNOPT
 Referenced in 375 articles
[sw02300]
 SNOPT: An SQP algorithm for largescale constrained...