• 13cflux2

  • Referenced in 2 articles [sw11825]
  • mathematical models. 13C-based metabolic flux analysis emerged as the state-of-the-art technique...
  • Isodesign

  • Referenced in 1 article [sw16410]
  • optimizing the design of 13-metabolic flux analysis experiments. The growing demand for 13C-metabolic ... flux analysis (13C-MFA) in the field of metabolic engineering and systems biology is driving ... step in improving both the number of fluxes that can be calculated from...
  • FFCA

  • Referenced in 2 articles [sw17351]
  • feasibility-based method for flux coupling analysis of metabolic networks. Background: Flux coupling analysis ... finding dependencies between fluxes of a metabolic network at steady-state. FCA classifies reactions into ... algorithm, FFCA (Feasibility-based Flux Coupling Analysis), which is based on checking the feasibility...
  • F2c2

  • Referenced in 2 articles [sw17352]
  • scale metabolic networks. Background: Flux coupling analysis (FCA) has become a useful tool ... based analysis of genome-scale metabolic networks. FCA allows detecting dependencies between reaction fluxes...
  • SCAMP

  • Referenced in 11 articles [sw02112]
  • control analysis program. SCAMP is a general-purpose simulator of metabolic and chemical networks ... support an ANSI C compiler. SCAMP accepts metabolic models described in a biochemical language ... experienced users rapidly to build and simulate metabolic systems. The language is sufficiently flexible ... coefficients and elasticities of metabolic control analysis; user-defined forcing functions at the model boundaries...
  • tFCA

  • Referenced in 1 article [sw17350]
  • analysis. Flux coupling analysis (FCA) has become a useful tool for aiding metabolic reconstructions ... property related to the supports of metabolic fluxes. In this paper, we further extend ... develop an efficient algorithm for generic flux coupling analysis that works with any kind ... thermodynamic flux coupling analysis (tFCA), which allows studying steady-state metabolic models with loop...
  • sybil

  • Referenced in 0 articles [sw15804]
  • constraint based analyses of metabolic networks (e.g. flux-balance analysis (FBA), minimization of metabolic adjustment...
  • MetaModel

  • Referenced in 4 articles [sw09011]
  • program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles ... calculating steady-state fluxes and metabolite concentrations of metabolic systems ... empirically the classic summation relationships of metabolic control analysis but also a research tool...
  • MetExplore

  • Referenced in 4 articles [sw12274]
  • database (freely available on demand). Information about metabolic networks mainly come from BioCyc-like databases ... Several genome-scale models designed for Flux Balance Analysis have also been imported into MetExplore...
  • sybilcycleFreeFlux

  • Referenced in 0 articles [sw15790]
  • space. Flux balance analysis is a technique to find fluxes in metabolic models at steady ... Palsson, B.O. What is flux balance analysis? Nat. Biotech...
  • BioMet

  • Referenced in 1 article [sw20501]
  • Toolbox, a web-based resource for stoichiometric analysis and for integration of transcriptome and interactome ... thereby exploiting the capabilities of genome-scale metabolic models. The BioMet Toolbox provides an effective ... substrate uptake rates and metabolic production rates by detecting relevant fluxes, simulate single and double...
  • ANSYS

  • Referenced in 434 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • LEDA

  • Referenced in 201 articles [sw00509]
  • In the core computer science areas -- data structures...
  • Maple

  • Referenced in 4047 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 4272 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 7362 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • PHCpack

  • Referenced in 149 articles [sw00705]
  • Algorithm 795: PHCpack: A general-purpose solver for...
  • R

  • Referenced in 3416 articles [sw00771]
  • R is a language and environment for statistical...
  • REDUCE

  • Referenced in 674 articles [sw00789]
  • REDUCE is an interactive system for general algebraic...
  • SNOPT

  • Referenced in 379 articles [sw02300]
  • SNOPT: An SQP algorithm for large-scale constrained...