• MetaCyc

  • Referenced in 28 articles [sw08243]
  • database of nonredundant, experimentally elucidated metabolic pathways. MetaCyc contains more than 2097 pathways from more ... pathways involved in both primary and secondary metabolism, as well as associated compounds, enzymes ... MetaCyc is to catalog the universe of metabolism by storing a representative sample of each ... reference data set for computationally predicting the metabolic pathways of organisms from their sequenced genomes...
  • GEPASI

  • Referenced in 34 articles [sw07916]
  • optimize any function of the model, perform metabolic control analysis and linear stability analysis. Gepasi...
  • SNOOPY

  • Referenced in 31 articles [sw04386]
  • natural systems, i.e. biochemcial networks as metabolic, signal transduction, gene regulatory networks, compare poster ”overview...
  • E-CELL

  • Referenced in 20 articles [sw07917]
  • cell that incorporate gene regulation, metabolism and signaling have not been established. We, therefore, were ... gene expression and other features of cellular metabolism, as a set of reaction rules...
  • iRNAm5C-PseDNC

  • Referenced in 22 articles [sw24531]
  • roles in biological processes by regulating RNA metabolism in both eukaryotes and prokaryotes...
  • SCAMP

  • Referenced in 11 articles [sw02112]
  • SCAMP: A metabolic simulator and control analysis program. SCAMP is a general-purpose simulator ... metabolic and chemical networks. The program is written in C and is portable ... support an ANSI C compiler. SCAMP accepts metabolic models described in a biochemical language ... experienced users rapidly to build and simulate metabolic systems. The language is sufficiently flexible...
  • BiGG

  • Referenced in 9 articles [sw17247]
  • genetic and genomic knowledgebase of large scale metabolic reconstructions. Background: Genome-scale metabolic reconstructions under ... framework are valuable tools for analyzing the metabolic capabilities of organisms and interpreting experimental data ... Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. BiGG integrates several published genome ... scale metabolic networks into one resource with standard nomenclature which allows components to be compared...
  • BacSim

  • Referenced in 16 articles [sw17261]
  • model describes bacterial properties including substrate uptake, metabolism, maintenance, cell division and death...
  • Metatool

  • Referenced in 15 articles [sw13278]
  • tool in the constraint-based modeling of metabolic networks. In recent years, new approaches...
  • LBS

  • Referenced in 14 articles [sw12372]
  • Systems (CBS) which affords modular descriptions of metabolic, signalling and regulatory networks in terms...
  • COBRA Toolbox

  • Referenced in 12 articles [sw32083]
  • modelling, analysing and predicting a variety of metabolic phenotypes using genome-scale biochemical networks...
  • MINMOD

  • Referenced in 10 articles [sw16356]
  • have been shown to represent an integrated metabolic portrait of a single individual...
  • NR-2L

  • Referenced in 9 articles [sw26879]
  • functions, such as homeostasis, reproduction, development and metabolism. Therefore, NRs are a very important target...
  • DrugBank

  • Referenced in 8 articles [sw23876]
  • drug design, drug docking or screening, drug metabolism prediction, drug interaction prediction and general pharmaceutical...
  • iNR-PhysChem

  • Referenced in 8 articles [sw26878]
  • processes, such as homeostasis, reproduction, development, and metabolism. Human genome contains 48 genes encoding...
  • HMDB

  • Referenced in 8 articles [sw28995]
  • contains pathway diagrams for  25,000 human metabolic and disease pathways, while FooDB contains equivalent...
  • MetaModel

  • Referenced in 4 articles [sw09011]
  • program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles ... steady-state fluxes and metabolite concentrations of metabolic systems on the IBM PC and compatible ... verify empirically the classic summation relationships of metabolic control analysis but also a research tool ... what if?’ questions about the behaviour of metabolic systems. Results can not only be printed...
  • SW1PerS

  • Referenced in 5 articles [sw17206]
  • across different processes (e.g. the cell and metabolic cycles, circadian rhythms, etc) is a central ... genes from data on the Yeast metabolic cycle which are highly-ranked only by SW1PerS...
  • TRANSPATH

  • Referenced in 7 articles [sw08272]
  • database of mammalian signal transduction and metabolic pathways. As one of the earliest pathway databases...
  • BioShape

  • Referenced in 7 articles [sw08522]
  • terms -- the blurry synergy between mechanical and metabolic factors triggering bone remodelling...