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GOLD
- Referenced in 6 articles
[sw23027]
- isolate genome, single-cell genome, metagenome, metatranscriptome) and complex Analysis Projects (such as genome from...
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SortMeRNA
- Referenced in 1 article
[sw17152]
- mapping and OTU-picking NGS reads in metatranscriptomic and metagenomic data. The core algorithm ... SortMeRNA is filtering ribosomal RNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy...
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FastAnnotator
- Referenced in 1 article
[sw22342]
- complete transcriptomes of non-model organisms or metatranscriptomes from environmental samples. The challenge after generating...
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MicrobiomeAnalyst
- Referenced in 1 article
[sw26776]
- metabolic network visualization of shotgun metagenomics or metatranscriptomics data; the Taxon Set Enrichment Analysis module...
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R
- Referenced in 8359 articles
[sw00771]
- R is a language and environment for statistical...
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STAR
- Referenced in 12 articles
[sw02515]
- STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
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Bioconductor
- Referenced in 298 articles
[sw04205]
- Bioconductor provides tools for the analysis and comprehension...
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Rfam
- Referenced in 33 articles
[sw04637]
- The Rfam database is a collection of RNA...
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edgeR
- Referenced in 46 articles
[sw06936]
- edgeR: a Bioconductor package for differential expression analysis...
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RNAshapes
- Referenced in 7 articles
[sw07960]
- RNAshapes: an integrated RNA analysis package based on...
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onechannelgui
- Referenced in 3 articles
[sw07962]
- oneChannelGUI: A graphical interface designed to facilitate analysis...
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BaySeq
- Referenced in 17 articles
[sw10343]
- baySeq: Empirical Bayesian analysis of patterns of differential...
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ViennaRNA
- Referenced in 20 articles
[sw10504]
- The ViennaRNA Package consists of a C code...
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EMBOSS
- Referenced in 34 articles
[sw10917]
- EMBOSS is ”The European Molecular Biology Open Software...
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ClustalW
- Referenced in 133 articles
[sw12016]
- CLUSTAL W: improving the sensitivity of progressive multiple...
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Mfold
- Referenced in 41 articles
[sw12672]
- Mfold web server for nucleic acid folding and...
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KEGG
- Referenced in 252 articles
[sw13866]
- KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
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Clustal X
- Referenced in 28 articles
[sw16249]
- Clustal W and Clustal X version 2.0. Summary...
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VARNA
- Referenced in 5 articles
[sw16406]
- VARNA: Interactive drawing and editing of the RNA...
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CompaRNA
- Referenced in 2 articles
[sw16474]
- CompaRNA: a server for continuous benchmarking of automated...