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  • GOLD
  • Referenced in 6 articles [sw23027]
  • isolate genome, single-cell genome, metagenome, metatranscriptome) and complex Analysis Projects (such as genome from...

  • SortMeRNA
  • Referenced in 1 article [sw17152]
  • mapping and OTU-picking NGS reads in metatranscriptomic and metagenomic data. The core algorithm ... SortMeRNA is filtering ribosomal RNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy...

  • FastAnnotator
  • Referenced in 1 article [sw22342]
  • complete transcriptomes of non-model organisms or metatranscriptomes from environmental samples. The challenge after generating...

  • MicrobiomeAnalyst
  • Referenced in 1 article [sw26776]
  • metabolic network visualization of shotgun metagenomics or metatranscriptomics data; the Taxon Set Enrichment Analysis module...

  • R
  • Referenced in 8180 articles [sw00771]
  • R is a language and environment for statistical...

  • STAR
  • Referenced in 12 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

  • Bioconductor
  • Referenced in 291 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • Rfam
  • Referenced in 32 articles [sw04637]
  • The Rfam database is a collection of RNA...

  • edgeR
  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...

  • RNAshapes
  • Referenced in 7 articles [sw07960]
  • RNAshapes: an integrated RNA analysis package based on...

  • onechannelgui
  • Referenced in 3 articles [sw07962]
  • oneChannelGUI: A graphical interface designed to facilitate analysis...

  • BaySeq
  • Referenced in 17 articles [sw10343]
  • baySeq: Empirical Bayesian analysis of patterns of differential...

  • EMBOSS
  • Referenced in 34 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...

  • ClustalW
  • Referenced in 133 articles [sw12016]
  • CLUSTAL W: improving the sensitivity of progressive multiple...

  • Mfold
  • Referenced in 41 articles [sw12672]
  • Mfold web server for nucleic acid folding and...

  • KEGG
  • Referenced in 250 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...

  • VARNA
  • Referenced in 5 articles [sw16406]
  • VARNA: Interactive drawing and editing of the RNA...

  • CompaRNA
  • Referenced in 2 articles [sw16474]
  • CompaRNA: a server for continuous benchmarking of automated...