• miRNet

  • Referenced in 1 article [sw29355]
  • functional interpretation of miRNAtarget interaction networks. By integrating multiple high-quality miRNA-target data ... easily navigate the complex landscape of miRNAtarget interactions to obtain deep biological insights. This...
  • LncmiRSRN

  • Referenced in 1 article [sw34139]
  • construct lncRNA related miRNA sponge regulatory networks (LncmiRSRNs) by integrating matched lncRNA and mRNA expression ... profiles with clinical information and putative miRNA-target interactions. Using the method, we have constructed ... networks, we discover that after being released from miRNA control, the target mRNAs are normally ... integrating expression profiles, clinical information and miRNA-target interactions for investigating lncRNA regulatory mechanism...
  • R

  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 81 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...
  • Bioconductor

  • Referenced in 298 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • gplots

  • Referenced in 6 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...
  • PLINK

  • Referenced in 61 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • gcrma

  • Referenced in 95 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • igraph

  • Referenced in 150 articles [sw07066]
  • The igraph software package for complex network research...
  • WGCNA

  • Referenced in 17 articles [sw07123]
  • R package WGCNA: Weighted Correlation Network Analysis. Functions...
  • BoolNet

  • Referenced in 14 articles [sw07365]
  • BoolNet: Generation, reconstruction, simulation and analysis of synchronous...
  • Cytoscape

  • Referenced in 69 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...
  • COPASI

  • Referenced in 62 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...
  • Dynagraph

  • Referenced in 13 articles [sw13656]
  • The Dynagraph libraries are written in platform-neutral...
  • BioNet

  • Referenced in 5 articles [sw13828]
  • The BioNet package provides an extensive framework for...
  • KEGG

  • Referenced in 252 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
  • RedeR

  • Referenced in 2 articles [sw14646]
  • RedeR: R/Bioconductor package for representing modular structures, nested...
  • Cellnoptr

  • Referenced in 5 articles [sw15114]
  • CellNOpt (from CellNetOptimizer; a.k.a. CNO) is a software...
  • iPath

  • Referenced in 3 articles [sw16937]
  • iPath: interactive exploration of biochemical pathways and networks...