
HapBlock
 Referenced in 5 articles
[sw26434]
 guaranteed to find the block partition with minimum number of tag SNPs for the given ... Third, several existing measures/criteria for haplotype block partitioning and tag SNP selection have been implemented...

ViennaRNA
 Referenced in 22 articles
[sw10504]
 dynamic programming algorithms for structure prediction: the minimum free energy algorithm of (Zuker & Stiegler ... which yields a single optimal structure, the partition function algorithm of (McCaskill 1990) which calculates...

TOP/DOMDEC
 Referenced in 9 articles
[sw20520]
 environment. Generated mesh partitions can be smoothed and optimized for minimum interface and maximum load ... priori the quality of a mesh partition and discriminating between different partitioning algorithms. The user...

RNAfold
 Referenced in 5 articles
[sw10505]
 RNAfold 2.1.8: Calculate minimum free energy secondary structures and partition function of RNAs. The program ... reads RNA sequences from stdin, calculates their minimum free energy (mfe) structure and prints ... option was given it also computes the partition function (pf) and base pairing probability matrix...

comana
 Referenced in 4 articles
[sw19648]
 recently gained much attention. We advocate a partitioned solution approach that enables ... interface available yet can be implemented with minimum effort...

SMOOTH
 Referenced in 1 article
[sw12951]
 objects, (e.g., minimum degree, KernighanLin, and some new graph partitioning methods). This collection...

GTSPLIB
 Referenced in 4 articles
[sw25565]
 given as input along with a partition of the vertices into disjoint sets. The objective ... visits each set exactly once and has minimum length. In this paper, we present...

SamplingStrata
 Referenced in 4 articles
[sw11930]
 sampling frame, the one that ensures the minimum sample cost under the condition to satisfy ... genetic algorithm: each solution (i.e. a particular partition in strata of the sampling frame...

AQuoSA
 Referenced in 5 articles
[sw11874]
 time of the workloads make a static partitioning of the central processing unit (CPU) that ... meet their QoS requirements with the minimum possible impact on CPU occupation. We implemented...

GraphREL
 Referenced in 2 articles
[sw18897]
 carefully exploit existing database functionality such as partitioned Btrees indexes and influencing the relational ... costs of the secondary storage to a minimum. Finally, our experiments utilise...

FIDAP
 Referenced in 37 articles
[sw00006]
 FIDAP (A Fluid Dynamics Analysis Program). This paper...

ANSYS
 Referenced in 662 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

ARMS
 Referenced in 64 articles
[sw00048]
 ARMS: an algebraic recursive multilevel solver for general...

BBVSCG
 Referenced in 6 articles
[sw00069]
 BBVSCG  A variablestorage algorithm for function minimization...

BoomerAMG
 Referenced in 163 articles
[sw00086]
 BoomerAMG: A parallel algebraic multigrid solver and preconditioner...

CGAL
 Referenced in 360 articles
[sw00118]
 The goal of the CGAL Open Source Project...

CoCoA
 Referenced in 631 articles
[sw00143]
 CoCoA is a system for Computations in Commutative...

CSDP
 Referenced in 198 articles
[sw00169]
 CSDP, A C Library for Semidefinite Programming. This...

Expokit
 Referenced in 178 articles
[sw00258]
 Expokit provides a set of routines aimed at...

GAP
 Referenced in 2874 articles
[sw00320]
 GAP is a system for computational discrete algebra...