• METRADE

  • Referenced in 1 article [sw28181]
  • Predictive analytics of environmental adaptability in multi-omic network models. Bacterial phenotypic traits and lifestyles ... over time, we develop a multi-omic model of Escherichia coli that accounts for metabolism ... translation levels. After the integration of multiple omics into the model, we propose a multiobjective ... analysis as estimators of short term multi-omic (transcriptomic and metabolic) evolution, thus enabling comparative...
  • MoNeRe

  • Referenced in 1 article [sw28180]
  • Multi-omic Network Regression: Methodology, Tool and Case Study. The analysis of biological networks ... computed states of a multi-omic (for instance metabolic, transcriptomic and proteomic) model. In this...
  • Omics Pipe

  • Referenced in 1 article [sw26801]
  • computational framework that automates multi-omics data analysis pipelines on high performance compute clusters...
  • DriverFinder

  • Referenced in 1 article [sw34273]
  • identify cancer driver genes. Integration of multi-omics data of cancer can help people...
  • solvebio

  • Referenced in 0 articles [sw17522]
  • collect and harmonize the complex, disparate ”multi-omic” data essential for today...
  • R

  • Referenced in 8359 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 81 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...
  • Bioconductor

  • Referenced in 298 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • gplots

  • Referenced in 6 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...
  • PLINK

  • Referenced in 61 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • gcrma

  • Referenced in 95 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • edgeR

  • Referenced in 46 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • igraph

  • Referenced in 150 articles [sw07066]
  • The igraph software package for complex network research...
  • WGCNA

  • Referenced in 17 articles [sw07123]
  • R package WGCNA: Weighted Correlation Network Analysis. Functions...
  • BoolNet

  • Referenced in 14 articles [sw07365]
  • BoolNet: Generation, reconstruction, simulation and analysis of synchronous...
  • Cytoscape

  • Referenced in 69 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...
  • COPASI

  • Referenced in 62 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...
  • Dynagraph

  • Referenced in 13 articles [sw13656]
  • The Dynagraph libraries are written in platform-neutral...
  • BioNet

  • Referenced in 5 articles [sw13828]
  • The BioNet package provides an extensive framework for...
  • KEGG

  • Referenced in 252 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...