• FEXACT

• Referenced in 14 articles [sw00281]
• Algorithm 643 FEXACT: The computer code for Mehta...

• R

• Referenced in 8359 articles [sw00771]
• R is a language and environment for statistical...

• STAR

• Referenced in 12 articles [sw02515]
• STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

• FactoMineR

• Referenced in 45 articles [sw04573]
• R package FactoMineR: Multivariate Exploratory Data Analysis and...

• Soap

• Referenced in 37 articles [sw08915]
• SOAP: short oligonucleotide alignment program. We have developed...

• Samtools

• Referenced in 20 articles [sw14583]
• Samtools is a suite of programs for interacting...

• FastQC

• Referenced in 5 articles [sw16946]
• FastQC: A quality control tool for high throughput...

• MEDIPS

• Referenced in 2 articles [sw17294]
• MEDIPS: genome-wide differential coverage analysis of sequencing...

• BEDTools

• Referenced in 11 articles [sw17302]
• BEDTools: a flexible suite of utilities for comparing...

• featureCounts

• Referenced in 5 articles [sw17317]
• featureCounts: an efficient general-purpose read summarization program...

• WebGestalt

• Referenced in 7 articles [sw17514]
• WebGestalt: An integrated system for exploring gene sets...

• g Profiler

• Referenced in 3 articles [sw20148]
• g:Profiler -- a web server for functional interpretation...

• chequeR

• Referenced in 1 article [sw20379]
• R package chequeR used to generate enrichment statistics...

• MMDiff

• Referenced in 1 article [sw20380]
• R / Bioconductor package MMDiff: Statistical Testing for ChIP...