• ARACNE

  • Referenced in 34 articles [sw17200]
  • network deconvolution problems. This method uses an information theoretic approach to eliminate the majority ... study the effects of misestimation of mutual information on network reconstruction, and show that algorithms ... based on mutual information ranking are more resilient to estimation errors. Conclusion: ARACNE shows promise...
  • SUN

  • Referenced in 13 articles [sw28156]
  • saliency) emerges as the pointwise mutual information between the features and the target when searching...
  • minet

  • Referenced in 7 articles [sw08432]
  • Inferring Large Transcriptional Networks Using Mutual Information. Results: This paper presents the R/Bioconductor package minet ... functions to infer mutual information networks from a dataset. Once fed with a microarray dataset...
  • JIDT

  • Referenced in 8 articles [sw23550]
  • principally for the measures transfer entropy, mutual information, and their conditional variants, as well...
  • PSICOV

  • Referenced in 5 articles [sw17010]
  • information-theoretic approach of calculating mutual information between pairs of sites in proteins. These predictions ... better than the best performing normalized mutual information approach and Bayesian networks...
  • NARROMI

  • Referenced in 5 articles [sw24066]
  • optimization (RO) and information theory-based mutual information (MI). In the proposed algorithm, the noisy...
  • ITE

  • Referenced in 5 articles [sw12811]
  • Information theoretical estimators toolbox. We present ITE (information theoretical estimators) a free and open source ... estimating many different variants of entropy, mutual information, divergence, association measures, cross quantities, and kernels...
  • NESToolbox

  • Referenced in 4 articles [sw19592]
  • nonlinear Gaussian-kernel-based mutual information [2] or the Event Synchronization function [3] available under...
  • npeet

  • Referenced in 2 articles [sw14336]
  • functions for both discrete and continuous variables. Information theory provides a model-free way find ... installed. It includes estimators for entropy, mutual information, and conditional mutual information for both continuous ... Divergence estimator for continuous distributions and mutual information estimator between continuous and discrete variables along...
  • MIDER

  • Referenced in 2 articles [sw20089]
  • toolbox for network inference. MIDER (Mutual Information Distance and Entropy Reduction) is a general purpose ... using an entropic measure based on mutual information, which takes into account time delays ... between several definitions and normalizations of mutual information...
  • ARACNe-AP

  • Referenced in 2 articles [sw34267]
  • engineering through adaptive partitioning inference of mutual information. The accurate reconstruction of gene regulatory networks ... Partitioning strategy (AP) for estimating the Mutual Information. The new AP implementation (ARACNe-AP) achieves ... previous methodology, while preserving the Mutual Information estimator and the Network inference accuracy...
  • CMfinder

  • Referenced in 6 articles [sw17265]
  • Bayesian framework that blends mutual information-based and folding energy-based approaches to predict structure...
  • varrank

  • Referenced in 2 articles [sw23896]
  • package for variable ranking based on mutual information with applications to observed systemic datasets. This ... which perform variable ranking based on mutual information. The package is particularly suitable for exploring...
  • Tigramite

  • Referenced in 2 articles [sw19594]
  • partial correlation, standardized regression, and conditional mutual information with different estimators); Fast computation through ... shuffle test for conditional mutual information; Flexible plotting scripts for publication quality presentation of results...
  • InterMap3D

  • Referenced in 2 articles [sw35272]
  • methods: Row and Column Weighing of Mutual Information, Mutual Information/Entropy and Dependency. Finally, InterMap3D generates...
  • IDTxl

  • Referenced in 3 articles [sw25603]
  • dynamics from multivariate time series data using information theory. IDTxl provides functionality to estimate ... entropy (TE)/Granger causality (GC), multivariate mutual information (MI), bivariate TE/GC, bivariate...
  • dit

  • Referenced in 3 articles [sw29392]
  • developed to quantify how quickly and reliably information could be transmitted across an arbitrary channel ... four reasonable multivariate generalizations of the mutual information, none of which inherit all the interpretations...
  • UJMP

  • Referenced in 3 articles [sw13256]
  • such as mean, correlation, standard deviation, mutual information, or the replacement of missing values...
  • RILogo

  • Referenced in 1 article [sw17139]
  • form of sequence logos, including the mutual information of base paired columns. We also introduce ... novel mutual information based measures that weigh the covariance information by the evolutionary distances ... increased accuracy compared with previous mutual information measures. Availability and implementation: RILogo is freely available...
  • aricode

  • Referenced in 1 article [sw29259]
  • normalized information distance (NID), normalized mutual information (NMI), adjusted mutual information (AMI), normalized variation information...