• PGMM

  • Referenced in 69 articles [sw07981]
  • package pgmm: Parsimonious Gaussian mixture models. Carries out model-based clustering or classification using parsimonious...
  • PAUP*

  • Referenced in 51 articles [sw07834]
  • PAUP*: phylogenetic analysis under parsimony. PAUP* version 4.0 is a major upgrade and new release ... previous versions of PAUP: Phylogenetic Analysis Using Parsimony has made it the most widely used...
  • Mixmod

  • Referenced in 36 articles [sw06991]
  • Moreover, different information criteria for choosing a parsimonious model (the number of mixture components...
  • ADMiRA

  • Referenced in 31 articles [sw31664]
  • atomic decomposition providing an analogy between parsimonious representations of a sparse vector...
  • SSS

  • Referenced in 30 articles [sw07794]
  • model space that induce sparsity and parsimony over and above the traditional dimension penalization implicit...
  • SplitsTree

  • Referenced in 30 articles [sw12234]
  • number of distances transformations, the computation of parsimony splits, spectral analysis and bootstrapping...
  • mixture

  • Referenced in 22 articles [sw14633]
  • Classification. An implementation of all 14 Gaussian parsimonious clustering models (GPCMs) for model-based clustering...
  • bfa

  • Referenced in 20 articles [sw07430]
  • factor models have proven widely useful for parsimoniously characterizing dependence in multivariate data. There...
  • funHDDC

  • Referenced in 18 articles [sw11130]
  • within and between groups, a family of parsimonious models is exhibited which allow...
  • SINDy

  • Referenced in 16 articles [sw30277]
  • Navier-Stokes equations. Instead, the most parsimonious nonlinear model is determined that is consistent with...
  • RPOLY

  • Referenced in 10 articles [sw05301]
  • challenging computational problem. Among others, pure parsimony is a viable modeling approach to solve ... approach for the haplotype inference by pure parsimony (HIPP) problem. Moreover, an extensive evaluation...
  • ContaminatedMixt

  • Referenced in 9 articles [sw21014]
  • ContaminatedMixt: An R Package for Fitting Parsimonious Mixtures of Multivariate Contaminated Normal Distributions. We introduce ... model are also implemented to introduce parsimony. The expectation-conditional maximization algorithm is adopted...
  • FindSteinerTree

  • Referenced in 12 articles [sw08245]
  • example, in phylogenetic studies where squared-change parsimony is much more widely used than...
  • GRAPPA

  • Referenced in 11 articles [sw17255]
  • used in reconstruction include distance-based methods, parsimony methods using sequence-based encodings, and direct...
  • ecceTERA

  • Referenced in 6 articles [sw24891]
  • comprehensive gene tree-species tree reconciliation using parsimony. A gene tree-species tree reconciliation explains ... ecceTERA, a program that implements a generic parsimony reconciliation algorithm, which accounts for gene duplication ... generalize or improve upon most published DTL parsimony algorithms for binary species trees and binary...
  • clustMD

  • Referenced in 10 articles [sw25059]
  • binary, ordinal or nominal variables) using a parsimonious mixture of latent Gaussian variable models...
  • PhyloNet

  • Referenced in 9 articles [sw20725]
  • fitness to sequence evolution under a maximum parsimony criterion; and (4) evolutionary network reconstruction: reconstructing...
  • ANCFIS

  • Referenced in 7 articles [sw34242]
  • world forecasting problems and is also very parsimonious. Experimental comparisons show that ANCFIS is comparable...
  • DupTree

  • Referenced in 4 articles [sw12376]
  • large-scale phylogenetic analyses using gene tree parsimony. Summary: DupTree is a new software program ... gene trees using the gene tree parsimony approach. The program implements a novel algorithm that ... standard search heuristics for gene tree parsimony, and enables the first truly genome-scale phylogenetic...
  • iGTP

  • Referenced in 3 articles [sw23050]
  • software package for large-scale gene tree parsimony analysis. BACKGROUND: The ever-increasing wealth ... coalescence), and horizontal gene transfer. Gene tree parsimony (GTP) addresses this issue by seeking ... promise, the use of gene tree parsimony has been limited by the fact that existing ... functionality and performance of existing gene tree parsimony software and offers advanced features such...