• TINKER

  • Referenced in 5 articles [sw04095]
  • interface to APBS for Poisson-Boltzmann calculations, efficient truncated Newton (TNCG) local optimization, surface areas ... splined spherical energy cutoff methods, particle mesh Ewald (PME) summation for partial charges and polarizable...
  • NAMD

  • Referenced in 56 articles [sw03198]
  • NAMD is a parallel molecular dynamics code designed...
  • FFTW

  • Referenced in 314 articles [sw04126]
  • FFTW is a C subroutine library for computing...
  • Gromacs

  • Referenced in 73 articles [sw04128]
  • GROMACS is a versatile package to perform molecular...
  • PFFT

  • Referenced in 8 articles [sw07582]
  • PFFT: An extension of FFTW to massively parallel...
  • 2DECOMP

  • Referenced in 5 articles [sw12729]
  • The 2DECOMP&FFT library is a software framework...